Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00232
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    79   2e-15
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    29   2.7  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    28   4.7  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   6.2  
AF039035-3|AAB94163.1|  349|Caenorhabditis elegans Hypothetical ...    27   6.2  
U39741-3|AAA80430.1|  163|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 33/59 (55%), Positives = 43/59 (72%)
 Frame = +3

Query: 255 CNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 431
           C EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 77  CAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVL 207
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 208 AENCDEAAYKKLVQAL 255
           AENCDE  Y KLV+ L
Sbjct: 61  AENCDEPQYVKLVETL 76


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 91  VNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAENCDEAAYKKLVQALATNIR 270
           V VAL +   T LIH   +H L++  K L     V C+L ++  +A Y +     A  +R
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMYPQYPAQPAPGVR 74


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 258 NEHQIPLVKVDNNKKLGEWAGLCK 329
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 149 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVL 6
           C   PW IK   +T C     S+L P + GLVG    T+ +++  LT L
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILTFL 377


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 237 LVCRFITVLSQNT*YCLPLVKSFXGFVK 154
           L+C  I ++ Q +  CLPLVK F  + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 237 LVCRFITVLSQNT*YCLPLVKSFXGFVK 154
           L+C  I ++ Q +  CLPLVK F  + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 321 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 428
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 136 GGLVHGLHEAXKALDKRQAVLCVLAENCDEAAYKKL 243
           GGLV G+  A KAL     V+ V++E C +A  K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 256 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 420
           +T+    + RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 4   STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


>AF039035-3|AAB94163.1|  349|Caenorhabditis elegans Hypothetical
           protein C53A3.2 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 285 P*PVESDVRCKSLNKFLVCRFITVLSQNT*YCLPL-VKSFXGFVKTVHKTTMD 130
           P PVESD   ++   FL  R  + L  N    LPL  KSF   +KT+     D
Sbjct: 10  PTPVESDSENENPKMFLESRIHSGLDPNCRSTLPLDPKSFSKVMKTIDTFIFD 62


>U39741-3|AAA80430.1|  163|Caenorhabditis elegans Hypothetical
           protein F12D9.2 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 31/109 (28%), Positives = 46/109 (42%)
 Frame = +1

Query: 88  DVNVALQEVLKTALIHGGLVHGLHEAXKALDKRQAVLCVLAENCDEAAYKKLVQALATNI 267
           D+N ++   LKT +  G L      A +AL KR   L +L    D  A KK+ Q      
Sbjct: 54  DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ------ 105

Query: 268 RFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRW 414
              +  LT      +   SARL  +    +L+AA   S   S  + ++W
Sbjct: 106 ---FETLTAIMGSSSSTDSARLIAIL---QLTAADKTSRNSSQHQPKKW 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,151,336
Number of Sequences: 27780
Number of extensions: 221668
Number of successful extensions: 646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)