Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00231
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   1.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    26   4.4  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   7.6  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -2

Query: 604 LYLERWHWLNYNCICLDATKDETSQLACFRVFLDVRLKHLCSFLHIKYHCCLIS 443
           + +E  H LN  CI LDA      Q+   R  +D       + + +   C L++
Sbjct: 18  MMVEAAHRLNIKCIILDAANSPAKQIDGGREHIDASFTDPDAIVELSKKCTLLT 71


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 577 LTSAIVPSIAISFTHALIPSFVLFI 651
           + + I+PS+A+S   +L+P F+ F+
Sbjct: 425 IITGILPSVALSILMSLVPPFIKFL 449


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 489 CFKRTSRKTRKQANWDVS 542
           C++ + +  +KQ+NWD+S
Sbjct: 156 CYEESKKYLQKQSNWDIS 173


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 216 NVNLKIRAELLFGCYFNVVTNCKHNVGEEEEASS 115
           +++L IR  L   CY + +TN +H+  + EE SS
Sbjct: 408 SIDLLIRIPLY--CYDDCLTNKEHSTSKSEEKSS 439


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 58  RYFKYNLEGKIKYSFRLYTTACLLFLANIMLTICDNVKI 174
           RY    + G +KY  +       L L NIML   +NVKI
Sbjct: 141 RYLMMQILGALKYMHKKRVIHRDLKLGNIMLDESNNVKI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,394
Number of Sequences: 5004
Number of extensions: 51415
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)