Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00231
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    28   6.0  
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110...    28   7.9  

>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 381 FIFIIVLRLYWNRI---FADHLPSNLKHREVNGQRTNEHLHYAE*DLA*IVNLNIKALNV 211
           F  I+ + L  N+I     + LP  L+H  +N  + N  L  A   L  +VNL+I + N+
Sbjct: 30  FTSIVTINLSNNKIGGTIPEDLPVTLQHMSLNDNQLNGQLPDAFGSLTGLVNLDISSNNL 89


>08_01_0139 +
           1105857-1107008,1107124-1107328,1107583-1107768,
           1107924-1108133,1108552-1109186
          Length = 795

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 460 DILYVKRSRDVSSARQGRLENRPIGTFRL*SRLNKCNYNLTSAIVPS 600
           D L  +R     SAR GRL N PI   +  +R+    +N T + V S
Sbjct: 70  DHLQRRREEFGDSARSGRLVNSPINIIKANARVKAALHNQTCSSVIS 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,520
Number of Sequences: 37544
Number of extensions: 278034
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)