Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00231
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)                    34   0.12 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)                 29   2.6  
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)                 29   4.6  
SB_39038| Best HMM Match : BEX (HMM E-Value=3)                         29   4.6  
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                28   8.0  
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               28   8.0  

>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
          Length = 434

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 257 HSA*CKCSLVRCPFTSRCFKLEGKWSAKIRFQ*RRKT 367
           H+   +CS  +CP T RCF  EGK   K  F  R  T
Sbjct: 26  HAQCVQCSDCKCPLTERCFSREGKLFCKTDFYRRYGT 62


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 490 VSSARQGRLENRPIGTF--RL*SRLNKCNYNLTSAIVPSIAISFTHALIPSFVLFINAT 660
           + S   G  E R + T   RL S L + ++N+T AIV  I+  FT A +P   L   AT
Sbjct: 274 IMSNSNGLKERRNLDTTVNRLTSELKRLDHNVTLAIVDQISSVFTCAELPIHNLVTTAT 332


>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
          Length = 714

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 408 YIKTNTEAEFIFIIVLRLYWN-RIFADHLPSNLKHREVNGQRTNEHLH 268
           Y K   ++ +  I+ L L  N R F  H PS  +HR   G++  ++ H
Sbjct: 139 YYKNEKKSMYFSIVALLLKQNSRRFCQHRPSFRRHRYQEGEQWGKYTH 186


>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
          Length = 595

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -2

Query: 586 HWLNYNCICLDATKDETSQLACFRVFLDVRLKHLCSFLHIKYHCCLISRKTLMCVNS 416
           HWL Y   C +     + + +C R  L  +    C +       CL  R  L C+N+
Sbjct: 534 HWLGYLWSCSEGKNSSSEKSSCIRTQLTCQYCLTCRY-------CLTCRYCLTCINT 583


>SB_39038| Best HMM Match : BEX (HMM E-Value=3)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +1

Query: 463 ILYVKRSRDVSSA---RQGRLENRPIGT 537
           IL+V+RS  +++    RQGRLE RP GT
Sbjct: 123 ILWVRRSEALATGCGRRQGRLERRPRGT 150


>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 139 WRGRGGKQWCTNEMNILFFLPNYI*NNGRDNIQV 38
           W  R  + +C N+ N +F L N   + G +NI++
Sbjct: 525 WEERLVEDYCDNKKNQVFLLSNTAGSEGTENIEI 558


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 139 WRGRGGKQWCTNEMNILFFLPNYI*NNGRDNIQV 38
           W  R  + +C N+ N +F L N   + G +NI++
Sbjct: 525 WEERLVEDYCDNKKNQVFLLSNTAGSEGTENIEI 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,059
Number of Sequences: 59808
Number of extensions: 352918
Number of successful extensions: 1160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)