Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00231
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute (pl...    27   9.3  
AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute (pl...    27   9.3  

>Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical
           protein F32B6.8b protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 345 RIFADHLPSNLKHREVNGQ-RTNEHLHYAE 259
           R+ + +LP+N + REV  Q + +E+ HY E
Sbjct: 204 RLLSGYLPTNAERREVTLQCKRDEYWHYVE 233


>Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical
           protein F32B6.8a protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 345 RIFADHLPSNLKHREVNGQ-RTNEHLHYAE 259
           R+ + +LP+N + REV  Q + +E+ HY E
Sbjct: 184 RLLSGYLPTNAERREVTLQCKRDEYWHYVE 213


>Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical
           protein K07G5.2 protein.
          Length = 241

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 598 LERWHWLNYNCICLDATKDETSQ 530
           ++ W W  YNC   DA +D+  +
Sbjct: 79  MDSWLWERYNCAVCDACRDDKGE 101


>AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform b protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 462 YFICKKEQRCFKRTSRKTRKQANWDVSSLVASKQMQL*FNQCH 590
           +F+C       + TSR +     WD + L A +  QL +  CH
Sbjct: 778 FFLCSHAG--IQGTSRPSHYHVLWDDNDLTADELQQLTYQMCH 818


>AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform a protein.
          Length = 910

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 462 YFICKKEQRCFKRTSRKTRKQANWDVSSLVASKQMQL*FNQCH 590
           +F+C       + TSR +     WD + L A +  QL +  CH
Sbjct: 797 FFLCSHAG--IQGTSRPSHYHVLWDDNDLTADELQQLTYQMCH 837


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,742
Number of Sequences: 27780
Number of extensions: 283781
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)