Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00230
         (825 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q26CN4 Cluster: Hypothetical transmembrane protein; n=1...    33   6.6  
UniRef50_Q6FSI4 Cluster: Candida glabrata strain CBS138 chromoso...    33   6.6  

>UniRef50_Q26CN4 Cluster: Hypothetical transmembrane protein; n=1;
           Flavobacteria bacterium BBFL7|Rep: Hypothetical
           transmembrane protein - Flavobacteria bacterium BBFL7
          Length = 226

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 243 NYLFFIFLVEFQFIYFSIFFKNIELSPVLNKYSKFRV 133
           N  FF      QF++ S FFK +   P+ +K+ K+ V
Sbjct: 72  NAPFFFLFALLQFVFLSYFFKKVITCPIFSKFFKYSV 108


>UniRef50_Q6FSI4 Cluster: Candida glabrata strain CBS138 chromosome
           H complete sequence; n=3; Saccharomycetales|Rep: Candida
           glabrata strain CBS138 chromosome H complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 211

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 405 YCVPAVSIQEYIFLYHSLLVDEFFCS 482
           YC P+VS+  Y++L    L  EFFC+
Sbjct: 30  YCEPSVSLMNYVYLEKPQLFSEFFCA 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,778,086
Number of Sequences: 1657284
Number of extensions: 10249019
Number of successful extensions: 22697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22638
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)