Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00230
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z70212-10|CAA94169.2|  319|Caenorhabditis elegans Hypothetical p...    28   9.3  
Z50177-8|CAA90548.2|  319|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 252 IVKNYLFFIFLVEFQFIYFSIFFKNIELSPVLNKYSKFRVN 130
           +V  ++FFIF++ F +++  I  + I   P+LN  +  R N
Sbjct: 185 LVCPFIFFIFMLSFLYMHIVIHMRKISRDPLLNNKNNRRNN 225


>Z70212-10|CAA94169.2|  319|Caenorhabditis elegans Hypothetical
           protein R04D3.10 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 638 FRHQYVQSVSFIGRSVNITIVNDL*FSRYSTFYYFHVKITKK 763
           F++QY   + F    VN+ I+  L F+R  T+  F    TKK
Sbjct: 171 FQNQYAILLPFTCMFVNLAIILHLRFARNDTYVKFKKFFTKK 212


>Z50177-8|CAA90548.2|  319|Caenorhabditis elegans Hypothetical
           protein R04D3.10 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 638 FRHQYVQSVSFIGRSVNITIVNDL*FSRYSTFYYFHVKITKK 763
           F++QY   + F    VN+ I+  L F+R  T+  F    TKK
Sbjct: 171 FQNQYAILLPFTCMFVNLAIILHLRFARNDTYVKFKKFFTKK 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,127
Number of Sequences: 27780
Number of extensions: 263468
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)