Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00229X
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    58   9e-10
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.26 
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   2.4  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   9.7  
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    24   9.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 57.6 bits (133), Expect = 9e-10
 Identities = 33/93 (35%), Positives = 53/93 (56%)
 Frame = +3

Query: 3   SAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQV 182
           SAE+A+E  +   E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V
Sbjct: 50  SAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERV 107

Query: 183 EVFKTNMNKVIERHPRQV*GLSVFLGSPWDCDA 281
            VF+ N    +++          ++G   D DA
Sbjct: 108 PVFEKNAIGFVKKILANFKDYDFYIGESMDPDA 140


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 51  VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 197
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +3

Query: 75  LVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVIERHPRQV 236
           L ET  +GD+ S+   LK   ++   +  ++  +++E  +   NK+ ER+ +++
Sbjct: 158 LKETDLYGDRDSFQSRLKQKKQRSEFRASKREMERLERDQELRNKIEERNKKEL 211


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 328 WYLRTIKVSISIHGNHASQSHGLPR 254
           WY++T K+SI    N+ S  +  P+
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQ 36


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 39   VESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEE 164
            +E+ V ++LN  L + Y F  K++    L  Y+ + V+ LE+
Sbjct: 1683 LENNVKLILNLILSKDYGFLLKENLAGILLTYLNQNVSSLEK 1724


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 GRFKDFQSFWGVHGIVMHGCHE 294
           GR +D + FW +HG+  HG  E
Sbjct: 279 GRIRD-RHFWLLHGLKSHGSLE 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,081
Number of Sequences: 5004
Number of extensions: 36193
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)