Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00229X
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 43 1e-04
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 29 2.4
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 2.4
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 5.5
01_01_0655 - 5001495-5002392,5002493-5002653,5002779-5003184,500... 27 5.5
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394... 27 7.3
09_04_0277 - 16322312-16322629 27 9.6
05_07_0325 - 29272613-29272849,29272903-29273025,29273084-29273149 27 9.6
05_01_0015 + 117238-117996 27 9.6
04_01_0011 + 207319-207605,207935-208184,208559-208729 27 9.6
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 42.7 bits (96), Expect = 1e-04
Identities = 31/90 (34%), Positives = 43/90 (47%)
Frame = +3
Query: 18 DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 197
DEG D VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK
Sbjct: 57 DEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLD---AEKQEEFKK 112
Query: 198 NMNKVIERHPRQV*GLSVFLGSPWDCDAWL 287
N+ + ++ L F+G D L
Sbjct: 113 NIEGATKYLLGKLKDLQFFVGESMHDDGGL 142
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 96 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKV 212
G +K TL L++Y+ +V A L+ +Q+E FK +NKV
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKV 1180
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -3
Query: 273 NPMDSPERLKVLKPAEDVFQLLCSCLF*ILQLGQAPSLPILLLIFSYSL*GTMCRISCHR 94
+P ++P+ + + + L I + APS + + SYSL GT + R
Sbjct: 654 SPKNTPQNYEAIAHTYSLLLLFSGSKASIFE-ALAPSFQVAFSLMSYSLEGTDSLLPSRR 712
Query: 93 RRMFRLA 73
R +F LA
Sbjct: 713 RSLFTLA 719
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 321 CVPSKSLYPFMATMHHNPMDSPERLKVLKPAEDVFQLLCSCLF 193
C PS SL F A +H +P+D E+ +L P ++ LL L+
Sbjct: 147 CSPSTSLILFSARLHTHPLDL-EKTNLLLPG-TLYPLLPGTLY 187
>01_01_0655 -
5001495-5002392,5002493-5002653,5002779-5003184,
5003523-5003572,5004710-5004727
Length = 510
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 51 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVIERHPR 230
V +V ++ A S+TL K L A L ++A E +TN ++ ERH
Sbjct: 344 VGVVYSYNDAVVTAARRMSSFTLVSSQTQKTLAAMLSDEA-FAGEYIRTNRRRLRERHEH 402
Query: 231 QV*GLS 248
V GL+
Sbjct: 403 VVAGLA 408
>02_05_0636 +
30536717-30537022,30538836-30538952,30539026-30539478,
30539589-30540647
Length = 644
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 349 MFEKHHDWYLRTIKVSISIHGNHASQSHGLPRKTESP*TCRGCLSI-TLFMFVLNTS 182
+F K HD + + +S G+ + QSHG P + C G L + + M V S
Sbjct: 163 IFSKFHD----ILALHVSTVGSQSEQSHGQPDTPQMENLCNGHLELQNIIMLVSEIS 215
>09_04_0277 - 16322312-16322629
Length = 105
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 174 QAPSLPILLLIFSYSL*GTMCRISCHRRRMFRLACG 67
+ P P LL+I ++ + I CH RR++RL G
Sbjct: 2 ELPPWPSLLVIVLTAVVFFLATILCHGRRVYRLPLG 37
>05_07_0325 - 29272613-29272849,29272903-29273025,29273084-29273149
Length = 141
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 313 WYANTNHDVFQTWSRRRGILNVRLGI 390
W HD++Q RRRG ++ GI
Sbjct: 60 WRGEEQHDLWQIKDRRRGATSISTGI 85
>05_01_0015 + 117238-117996
Length = 252
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 3 SAEEADEGTDSAVESGVDIVLNHRLVETYAF 95
+A ADEG S +E G +V RLVE ++
Sbjct: 14 TAASADEGQRSVLEFGAIVVCPRRLVEVDSY 44
>04_01_0011 + 207319-207605,207935-208184,208559-208729
Length = 235
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 39 VESGVDIVLNHRLVETYAFGDKKS-YTLYLKDYMKKL 146
+ + +DIV NHRL F D++ Y+L+L +++++
Sbjct: 59 INAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQI 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,708
Number of Sequences: 37544
Number of extensions: 214884
Number of successful extensions: 487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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