Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00229X
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)               24   2.4  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     27   5.6  
SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)            27   9.9  
SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     27   9.9  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   SAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKL-EEKAPDQ 179
           SAE+A +  +    +G ++V+ +RLVE   +   K      K Y+KK+   + EE  PD+
Sbjct: 56  SAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKPYIKKVKEHMKEEGCPDE 114


>SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
          Length = 259

 Score = 23.8 bits (49), Expect(2) = 2.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 256 WGVHGIVMHGCHEW 297
           W    +V +GCH+W
Sbjct: 62  WSSRVVVTNGCHQW 75



 Score = 23.4 bits (48), Expect(2) = 2.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 271 IVMHGCHEWI*RL 309
           +V  GCHEW+ R+
Sbjct: 85  VVTSGCHEWLSRV 97


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 300 YPFMATMHHNPM---DSPERLKVLKPAEDVFQLL 208
           YP   TM H P    +SP +LK  K  ED F  L
Sbjct: 712 YPRHGTMQHRPFGDPESPNKLKRCKQMEDAFSRL 745


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 313 WYANTNHDVFQTWSRRRGILNVRL 384
           WYAN   ++ + W  RR  L  +L
Sbjct: 798 WYANNKEELHKVWEARRAELRAKL 821


>SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)
          Length = 473

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 455 TCDC*LIKKHKSIKPPVWNY*VIPNLTFRIPLLLDHV 345
           TCD  + +   S  PP W    IP+L  R+ L+ D +
Sbjct: 353 TCDSRVREHGLSPPPPPWQL-TIPSLAIRLQLMFDSI 388


>SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 96  GDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVIERH 224
           G + S T  ++   K+   K  +K  +  E  KTN NK IE H
Sbjct: 52  GVEPSETEKIESEKKRKKEKKNKKDMETQETLKTNNNKKIEHH 94


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 230 PRMSFNYFVHVCFKYFNLVRR 168
           P   F +F+ +C + FNL+RR
Sbjct: 342 PSPRFQHFIDLCSRAFNLIRR 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,407
Number of Sequences: 59808
Number of extensions: 246224
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)