Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00227X
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   117   7e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    66   3e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    62   4e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    59   3e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    40   2e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    39   4e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   5e-04
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   1.6  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   2.2  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   2.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   2.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   3.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   5.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.6  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    24   8.7  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   8.7  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    24   8.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  117 bits (282), Expect = 7e-28
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = +2

Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
           +EAQSKRGILTLKYPI HGIV NWDDME IWHHTF NELRVAPEEHP LLTEAPLNPK+
Sbjct: 56  DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKS 114



 Score =  110 bits (265), Expect = 8e-26
 Identities = 48/60 (80%), Positives = 56/60 (93%)
 Frame = +3

Query: 93  DEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
           +EE+AALV+D+GSGMCKAG+AGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG   ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 65.7 bits (153), Expect = 3e-12
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +2

Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*N-ELRVAPEEHPVLLTEAPL 418
           +EAQ+ RG+L ++ PI  GI+ NW DME IW + + + +L   PEEHP+LLTE PL
Sbjct: 60  SEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115



 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 111 LVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 254
           + +D+GSG  KAG+AGDD P+ +FP+ VGR +H+ VM    QKD +VG
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVG 59


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 24/72 (33%), Positives = 47/72 (65%)
 Frame = +2

Query: 215 RDGRYGTEGLLCRNEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHP 394
           + G    + ++  +EA++ R +L +KYP+ +GI+ ++++M  +W +TF  +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 395 VLLTEAPLNPKA 430
           +LLTE P+NP A
Sbjct: 103 ILLTEPPMNPVA 114



 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +3

Query: 99  EVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRP 203
           E A +V+D+G+G  K GYA D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 254 NEAQSKRGI-LTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNP 424
           N+A  K     +L YPI HG + NWD ME  W  +    LR  PE+H  LLTE PLNP
Sbjct: 78  NDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135



 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = +3

Query: 111 LVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGMR 260
           +++D+G+G  K GYAG+DAP  VFP+++   R  G   G  +  K SY+  +
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 281 LTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNP 424
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110



 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 96  EEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVG 197
           +EV+A+V+D GS   + G++G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 215 RDGRYGTEGLLCRNEAQSKRGILTL-KYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEH 391
           RD +      L  N+   + G  ++ + P    +++NWD ME +  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTF-LKLGIDRMEH 116

Query: 392 PVLLTEAPLNP 424
           P+ +TE   NP
Sbjct: 117 PICMTEPLANP 127



 Score = 34.3 bits (75), Expect = 0.008
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 111 LVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPR 206
           LV+D+GS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 38.3 bits (85), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 96  EEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVG 197
           EE+ +LV+D GS   + GYAG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41



 Score = 33.1 bits (72), Expect = 0.019
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 305 HGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
           +GI+ +W+     W      +L+V P E+ +++TE   NP++
Sbjct: 74  NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQS 115


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 263 VPHSYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCVTGLAHTG 129
           V  +Y  +LL   D + +  G  +DR +  + + + CV  L H+G
Sbjct: 223 VKGTYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 376 DTQLILEGMMPNHLHVIPVSDDSVY 302
           D Q     ++ NH H +P+ D ++Y
Sbjct: 376 DMQTFFSDLVSNHQHYVPIIDAAIY 400


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 339 ISMSSQLVTIPCTMGYLRVRIPLLLCASFLHKSPSVPYRPSR 214
           + +SS   +IP    +L+  I + L + F  + PS+ Y+ SR
Sbjct: 155 VRVSSSFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSR 196


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 252 LHKSPSVPYRPSRPDGGAFPRSRGTR 175
           + K+PS PY  SRP   A   S  TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 138 TYRSHDLLPTRQLLRRT 88
           TYR HD +PT  LL  T
Sbjct: 168 TYRDHDAIPTATLLNPT 184


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 232 PIPTITP*WRGLPTIEGNTARGASSPA*PAL 140
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 156 GDDAPRAVFPSIVGRPRHQGVMVGM 230
           G+  PRA F  ++  P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 150 NRPCTYRSHDLLPTRQ 103
           NRP  YRSH  + TR+
Sbjct: 323 NRPSNYRSHSSMGTRR 338


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 263 VPHSYIRVLLSHTDHHALMA 204
           VPHSY  V L ++DH  + A
Sbjct: 825 VPHSYQSVPLYYSDHRPIYA 844


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 375 SPPRNTQSCSLRLPSTP 425
           SPP++T+  S R PS P
Sbjct: 285 SPPQSTRPSSTRFPSVP 301


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 296 PIVHGIVTNWDDMEMIWHHTF 358
           PI  G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,553
Number of Sequences: 5004
Number of extensions: 40507
Number of successful extensions: 108
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)