Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00227X
(431 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_56| Best HMM Match : Actin (HMM E-Value=0) 122 1e-28
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 122 1e-28
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-28
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 1e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 58 2e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 57 5e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 3e-06
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 42 3e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 33 0.13
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.23
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 31 0.40
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_34833| Best HMM Match : E6 (HMM E-Value=7.2) 28 3.8
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 27 5.0
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 6.6
SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 8.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
+EAQSKRGILTLKYPI HGIVTNWDDME IWHHTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Score = 114 bits (274), Expect = 3e-26
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
M D+E+AALVVD+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 122 bits (295), Expect = 1e-28
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
+EAQSKRGILTLKYPI HGIVTNWDDME IWHHTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
Score = 111 bits (267), Expect = 2e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 93 DEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
+++VAALVVD+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 122 bits (295), Expect = 1e-28
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
+EAQSKRGILTLKYPI HGIVTNWDDME IWHHTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 114
Score = 112 bits (270), Expect = 1e-25
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +3
Query: 93 DEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
++EVAALVVD+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 122 bits (295), Expect = 1e-28
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
+EAQSKRGILTLKYPI HGIVTNWDDME IWHHTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Score = 118 bits (285), Expect = 2e-27
Identities = 53/62 (85%), Positives = 59/62 (95%)
Frame = +3
Query: 87 MCDEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
MCD++VAALVVD+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 122 bits (295), Expect = 1e-28
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPKA 430
+EAQSKRGILTLKYPI HGIVTNWDDME IWHHTF NELRVAPEEHPVLLTEAPLNPKA
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 115
Score = 114 bits (274), Expect = 3e-26
Identities = 50/62 (80%), Positives = 58/62 (93%)
Frame = +3
Query: 87 MCDEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHR 266
M D+++AALV+D+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 AK 272
+K
Sbjct: 61 SK 62
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 112 bits (270), Expect = 1e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +3
Query: 93 DEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGMRHRAK 272
D++VAALV+D+GSGMCKAG+AGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 64.9 bits (151), Expect = 3e-11
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF 358
+EAQSKRGILTLKYPI HGIVTNWDDME I TF
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 SGRDGRYGTEGLLCRNEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF-*NELRVAPE 385
S + G + L+ +EA R +L + YP+ +GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 386 EHPVLLTEAPLNP 424
VLLTE PLNP
Sbjct: 104 NTKVLLTEPPLNP 116
Score = 44.0 bits (99), Expect = 5e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 105 AALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRP 203
+ +V D+G+G K GYAG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 58.4 bits (135), Expect = 2e-09
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +3
Query: 96 EEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQ 212
E LV+D GS M K G+AGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 57.2 bits (132), Expect = 5e-09
Identities = 22/34 (64%), Positives = 30/34 (88%)
Frame = +3
Query: 111 LVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQ 212
+V+D+GSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 341 IWHHTF*NELRVAPEEHPVLLTEAPLNPK 427
+W H F ++LRV E+ PVLLTEAPLNPK
Sbjct: 2131 MWEHAF-DQLRVRGEDFPVLLTEAPLNPK 2158
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 81 FKMCDEEVAALVVDHGSGMCKAGYAGDDAPRAVFPSIVGRPRHQGVMVG 227
FK+ A+V+D+G G+ K G+AGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = +2
Query: 254 NEAQSKRGILTLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLL 403
+EA K T K+PI H IV +WD ME W LR PE+H LL
Sbjct: 288 DEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -1
Query: 209 MAGPSHDRGEHGARSIISCVTGLAHTGAMIYYQRGNFFV 93
MA + D GE+G+ SI+S TGLAHTGA+I Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
Length = 1592
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 421 VEGSLSEQDWVFLGGDTQLILEGMMPNHLHVI 326
+ SL++Q+W + D Q+I+EG M NH ++I
Sbjct: 1329 IRQSLTKQEWRWQMDDPQMIVEGAMQNHYNMI 1360
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 32.3 bits (70), Expect = 0.17
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 212 GRDGRYGTEGLLCRNEAQSKRGIL-TLKYPIVHGIVTNWDDMEMIWHHTF*NELRVAPE- 385
GR G + GL N+ S I L+ P +VT+++ E + H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 386 -EHPVLLTEAPLNP 424
HPV++TE NP
Sbjct: 165 VNHPVIMTEPVCNP 178
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +2
Query: 386 EHPVLLTEAPLNPK 427
+HPVLLTEAPLNP+
Sbjct: 126 QHPVLLTEAPLNPR 139
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 31.1 bits (67), Expect = 0.40
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 296 PIVHGIVTNWDDMEMIWHHTF*NELRVAPEEHPVLLTEAPLNPK 427
PI G++ +WD E I + + ++ HP+L++EA N +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTR 46
>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 339 ISMSSQLVTIPCTMGYLRVRIPLLLCASFLHKSPSVP 229
+S+ V PC M LRVR+ C S LH + P
Sbjct: 53 VSVLGVRVACPCCMSLLRVRVVCPCCMSVLHVRVACP 89
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 339 ISMSSQLVTIPCTMGYLRVRIPLLLCASFLHKSPSVP 229
+S+ V PC M L VR+ C S LH + P
Sbjct: 1 MSLLRDRVVCPCCMSVLCVRVACPCCVSVLHVRVACP 37
>SB_34833| Best HMM Match : E6 (HMM E-Value=7.2)
Length = 135
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 159 LLRNRPCTYRSHDLLP 112
L R R C YRSH+LLP
Sbjct: 52 LFRGRYCQYRSHNLLP 67
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 296 PIVHGIVTNWDDMEMIWHHTF*NE 367
P G + NWD + IW +TF E
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 99 EVAALVVDHGSGMCKAGYAGDDAPRAV 179
++A LV+D G+ K G+A + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 255 FLHKSPSVPYRPSRPDGGAFPRSRGTRREE 166
++++ PS RP P+G P G REE
Sbjct: 234 YMNRGPSFANRPPGPEGYRRPSHEGASREE 263
>SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 182 PLDRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTL 289
PL R A GRDG + + RNEA+ KR I L
Sbjct: 523 PLGRVTAVCEGRDGYVRSVTVKTRNEAELKRPIAKL 558
>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 379
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -3
Query: 339 ISMSSQLVTIPCTMGYLRV---RIPLLLCASFLHKSPSVPYRP 220
I S LV++ + Y RIP LC L PS PY+P
Sbjct: 257 ILTSPSLVSLQAPLSYSYKPLPRIPSSLCLLSLQAPPSYPYKP 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,607
Number of Sequences: 59808
Number of extensions: 365126
Number of successful extensions: 895
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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