Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00227X
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.36 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   2.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   4.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.9  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 287 GSGYLFCSVPHSYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCV 150
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C+
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTCM 374


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -1

Query: 257 HSYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCVTGLAHT 132
           HS+I     H  HH+  A P H      A S       + HT
Sbjct: 423 HSHIHATPHH--HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2

Query: 188 DRGKAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIVHGI 313
           D  K PPS R  R        RN     RG    K  ++H I
Sbjct: 403 DPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAI 444


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 197 KAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIVHGIVTNWDD 331
           K  P G  G  G + +L   E   KRG++  +  +     T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 197 KAPPSGRDGRYGTEGLLCRNEAQSKRGILTLKYPIVHGIVTNWDD 331
           K  P G  G  G + +L   E   KRG++  +  +     T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 368 AHSRRYDAKSSPCHP 324
           AH R Y A SS C P
Sbjct: 67  AHHRLYPAFSSSCDP 81


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 132 GMCKAGYAGD 161
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,648
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)