Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00225X
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   1.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   1.3  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   3.9  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   3.9  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    25   5.1  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    24   8.9  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 106 DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 225
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 106 DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 225
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 194 LSIGIFTRWYIPK*GIGEYAYNR 126
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 347 GDPVGYLLSLVVALTDERKLFVHIVAPREASILSRLVTFPS 225
           G P  YL    + L+  RK    I+AP  ++I+  ++  PS
Sbjct: 221 GQPKDYLTGTCLYLSSLRKHKPEILAPASSNIIGNVLIDPS 261


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 169 HLVKIPIDRGLVHHVDYWGEGKVTNLDKIEASLGATM*TNSLRSSVRATTRESK 330
           +L++  ++R L+H VDY G+  +  LD +  S  + +  +SLRS ++   ++ K
Sbjct: 72  NLLRKTLNRPLLHEVDYHGK-SLEILDMLLQSRNSMI--SSLRSELQEKNQKDK 122


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 205 HHVDYWGEGKVTNLDKIEASLGATM*TNSLRSSVRATTRESKY 333
           H  D W  G +TN  +++  LG ++     R  +  T ++  Y
Sbjct: 135 HIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSY 177


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 285 RSHCSSEGSLYLVKVSHFSFSPV 217
           R+H   EG + LV V+  SFSP+
Sbjct: 114 RNHLVDEGKIPLVLVACGSFSPI 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,348
Number of Sequences: 5004
Number of extensions: 33795
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)