Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00225X
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   3.9  
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             27   6.8  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     27   6.8  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               27   6.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 124 PHLCRSLAQRRLPILPLTVFLPVK 53
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 283  TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 417
            TN ++  V+   ++S++P  S        T     +T +S +LPS
Sbjct: 2190 TNQVQQPVQEVVKDSRFPVSSLEASGGAMTSSSQEDTRSSSILPS 2234


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 138 VLPNTLLRYVPPREDPDRQRAGTPCRLL 221
           +LP  ++  V  R  P+R +A  PCRLL
Sbjct: 46  LLPLEIIPAVKQRALPERHKARAPCRLL 73


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 211 VDYWGEGKVTNLDKIEASLGATM*TNSLRSSVRATT 318
           VD  GE +  N+D I  +L  T+ TN++ S+V  +T
Sbjct: 109 VDGGGEHEAHNMDNIIRTLSETINTNAVSSTVGEST 144


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 283  TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTAS 402
            T +  + V ATT E+     + S + TTAT+  ++ TT S
Sbjct: 1226 TTTTAAMVEATTTEAAVTASTASVVTTTATIASSTITTPS 1265


>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 298 SSVRATTRESKYPTGSPSCLWTT-ATLPVTSETTASKLLPS 417
           S++  +   +K  TG P+C WT+ +TL +T+ T+A+ ++PS
Sbjct: 473 SAILDSATVAKLGTG-PTCSWTSKSTLVITTGTSAT-IMPS 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,978
Number of Sequences: 59808
Number of extensions: 269013
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)