Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00224
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.42 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.9  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
 Frame = -3

Query: 453  PDWLPKVSIW--LTTSMP----STTFPKTTCLPSSQEVLT-VVMKNWE---PLVSAPALA 304
            PDW  K S W   TT+ P    +TT   TT  P++    T     NW      +  PA+ 
Sbjct: 1033 PDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVV 1092

Query: 303  MERTPGP 283
            M     P
Sbjct: 1093 MPEVDKP 1099


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 99  TCENFRALCTGEK 137
           T ++FR LCTG K
Sbjct: 408 TLDDFRGLCTGNK 420


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 273 LSTLDLASSPWLMPV 317
           +ST+DL SS W +P+
Sbjct: 391 MSTIDLRSSYWQIPL 405


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 131 ASAQGTEVFTRLGSDVTSQLNNNFSQWGIVNSDVE-EY 21
           A   G    ++L + + S   + FSQWG    D++ EY
Sbjct: 110 AILNGIVASSKLRASLISSCLSFFSQWGYDGIDIDWEY 147


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 310 CRC*Y*WFPVLHHHCQDLLAGW 375
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 310 CRC*Y*WFPVLHHHCQDLLAGW 375
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 310 CRC*Y*WFPVLHHHCQDLLAGW 375
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 310 CRC*Y*WFPVLHHHCQDLLAGW 375
           C+    WFP    HC      W
Sbjct: 128 CKIDITWFPFDDQHCDMKFGSW 149


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +1

Query: 310 CRC*Y*WFPVLHHHCQDLLAGW 375
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,250
Number of Sequences: 336
Number of extensions: 4106
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)