Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00224
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 126 4e-30
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 115 7e-27
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 99 5e-22
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 94 1e-20
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 76 4e-15
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 72 6e-14
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 64 1e-11
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 62 7e-11
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 4e-04
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 31 0.11
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.4
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 2.4
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 3.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 3.2
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 3.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 5.6
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.4
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 7.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 9.7
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 9.7
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 126 bits (303), Expect = 4e-30
Identities = 56/77 (72%), Positives = 61/77 (79%)
Frame = +3
Query: 24 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGE 203
FFDV + PLG+IV +L DV PKT NFRALCTGEKG+GY GS FHRVIP FMLQGG+
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64
Query: 204 FTNHNGTGGKSIYGNKF 254
FT NGTGGKSIYG KF
Sbjct: 65 FTRGNGTGGKSIYGEKF 81
Score = 122 bits (294), Expect = 5e-29
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DENF LKH PG+LSMANAG +TNGSQFFITTV T WLDG+HVVFG V EGM+VV ++E+
Sbjct: 83 DENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVES 142
Query: 437 FGSQSGKTSKRIVIKDCGQI 496
GS SG T RIVI CG +
Sbjct: 143 LGSNSGATRARIVIDKCGTV 162
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 115 bits (276), Expect = 7e-27
Identities = 51/78 (65%), Positives = 61/78 (78%)
Frame = +3
Query: 21 VFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGG 200
V+FD+ D LG++ I L PKT ENFRAL TGEKGFGY+GSIFHRVIPNFM+QGG
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGG 88
Query: 201 EFTNHNGTGGKSIYGNKF 254
+ T +GTGGKSIYG++F
Sbjct: 89 DITKGDGTGGKSIYGSRF 106
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQI 430
DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG V+ G ++V +I
Sbjct: 108 DENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKI 165
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 99.1 bits (236), Expect = 5e-22
Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIE- 433
DENFTLKH PG+LSMANAG D+NG QFFITTV +LDG+HVVFG V+EG ++V +IE
Sbjct: 93 DENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIES 152
Query: 434 TFGSQSGKTSKRIVIKDCGQI 496
T + + + I +CG++
Sbjct: 153 TPVGANSRPKSNVAIVECGEM 173
Score = 88.2 bits (209), Expect = 9e-19
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Frame = +3
Query: 15 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVI 176
P VF D+ +D LG+I I L S + PKT ENFR CTGE K GYK S FHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 177 PNFMLQGGEFTNHNGTGGKSIYGNK 251
FM+QGG+F + +GTG +I+ ++
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSR 89
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 94.3 bits (224), Expect = 1e-20
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DENF LKH P +LSMANAG +TNGSQFFITTV T LDG+HVVFG V++G V IE
Sbjct: 88 DENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIEN 147
Query: 437 FGSQSGKTSKRIVIKDCG 490
+++ +VI++CG
Sbjct: 148 LETKNDDPVVPVVIEECG 165
Score = 89.4 bits (212), Expect = 4e-19
Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Frame = +3
Query: 24 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFML 191
+F +++D I EL +V PKT +NF +LC G + G YKGS FHRVI NFML
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 192 QGGEFTNHNGTGGKSIYGNKFK 257
QGG+FT NGTGG+SIYG KF+
Sbjct: 66 QGGDFTRGNGTGGESIYGEKFE 87
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 76.2 bits (179), Expect = 4e-15
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +2
Query: 272 LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQI 430
L HTG G+LSMANAG +TN SQFFIT T WLDG+H +FG VV G+ V ++
Sbjct: 80 LHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRM 132
Score = 75.8 bits (178), Expect = 5e-15
Identities = 39/71 (54%), Positives = 51/71 (71%)
Frame = +3
Query: 54 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGTGGK 233
LGKI+IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F++QGG+ T G GG
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65
Query: 234 SIYGNKFKTRI 266
SIYG+KF I
Sbjct: 66 SIYGDKFDDEI 76
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 72.1 bits (169), Expect = 6e-14
Identities = 31/54 (57%), Positives = 40/54 (74%)
Frame = +2
Query: 272 LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIE 433
LKH P +SMAN+G +TNGSQFFITT T WLDG+H +F G++VV++IE
Sbjct: 533 LKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIE 586
Score = 58.8 bits (136), Expect = 6e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +3
Query: 57 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGTGGKS 236
G I I+L + PK +NF E G+ Y +IFHR+I NFM+QGG+ +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519
Query: 237 IYGNKFKTRISP 272
I+ F+ ISP
Sbjct: 520 IWKKDFEDEISP 531
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 64.5 bits (150), Expect = 1e-11
Identities = 34/72 (47%), Positives = 42/72 (58%)
Frame = +3
Query: 57 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGTGGKS 236
G I IEL PK C NF LC +G+ Y G+I HRV+P F++QGG+ T G GG+S
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77
Query: 237 IYGNKFKTRISP 272
IYG F P
Sbjct: 78 IYGEPFAVETHP 89
Score = 32.3 bits (70), Expect = 0.064
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 290 GVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 403
G++ MA + N SQFFIT T +G+ +FG VV
Sbjct: 97 GLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 62.1 bits (144), Expect = 7e-11
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 272 LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIETFGSQS 451
LKH G++SMAN G +TNGSQFFI LD +H +FG VV G+ V++ +E + S
Sbjct: 354 LKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNS 413
Query: 452 GKTSK 466
K
Sbjct: 414 NDHPK 418
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/67 (44%), Positives = 42/67 (62%)
Frame = +3
Query: 57 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGTGGKS 236
G+I IEL +D P NF L ++G+ Y+ +IFHR I FM+QGG+ + G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340
Query: 237 IYGNKFK 257
I+G FK
Sbjct: 341 IWGKPFK 347
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 45 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGT 224
+ +G +VI+L PKTCENF LC K Y F+ + N+ Q G+ G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62
Query: 225 GGKSIY 242
GG+ ++
Sbjct: 63 GGRCVW 68
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 595 NYSLLGRYFYLSGGLSV*LKILQFVLKLMFKLGNLTTVFDNDSLRGLP 452
NY R F LS GLSV L F L N T+F N +++ LP
Sbjct: 43 NYRASNRPFGLSTGLSVQLNASNMTDPFKFLLDNWHTIFKNGAIKLLP 90
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -2
Query: 490 TTVFDNDSLRGLPRLAAKGLNLVDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 332
T VFD + +L+ +++VDN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 33 VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 128
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 257 LKLIAVDGLSPSAVMVGEFPSLQHEIGDDTMENGALVTEAFLASAQGTEVFTRLGSD 87
LKL+ G+ + VM+ + E+ + A+++ L S GT + + LG +
Sbjct: 311 LKLLTEHGIECTYVMISALSYIMQEVTKIFLGGHAMLSNGALYSRAGTSLISLLGHE 367
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 26.6 bits (56), Expect = 3.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 64 LLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCC-----KEGNSPTITALG 228
++ S E +SLP+ K+ R SV +PF++ S +S K+GN P
Sbjct: 550 IISSGEHSSLPKNSKS-------RNVSVFSSPFNVPSFTVSSSDQVQKKKGNVPNAIETD 602
Query: 229 ESPSTAIS 252
SPS IS
Sbjct: 603 SSPSDTIS 610
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 328 WFPVLHHHC 354
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 169 VSSPISCCKEGNSPTITALGESPSTAISLRRE 264
V+SP+ C SP +++ S S + SLR E
Sbjct: 323 VTSPLQSCTNSPSPPLSSPASSASPSESLRNE 354
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 423 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 274
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 228 GKSIYGNKFKTRISPLSTLDLASSPWLMPV 317
G + N FKTR+S L ++++PW + V
Sbjct: 163 GAFCFVNCFKTRLSNWMLLPISANPWYIQV 192
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 60 KIVIELRSDVTPKTC-ENFRA---LCTGEKGFGYKGSIFHRVIPNFMLQGGEF 206
++++ L SD+ PK C NF+A L FG + + F +I + G F
Sbjct: 1135 QLMLRLHSDIYPKICISNFKALRELSFSISEFGKENATFTLLIKLVFINWGRF 1187
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.4
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Frame = -2
Query: 205 NSPPCSMKLGMTRWKMEPL*PKPFSPVH---RAR-----KFSHVL-GVTSLLSSITIFPS 53
NS P M L P PKP +PV+ R + S+VL +TS SS+T PS
Sbjct: 299 NSNPAVMSLSSNF----PSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPS 354
Query: 52 GASSTVTSKNT 20
+ +T+ S T
Sbjct: 355 NSPATLNSYTT 365
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 496 NLTTVFDNDSLRGLPRLAAKGLNLVDNFHA--FNNIPKDNMSAIQPGGLDSGDEELGTIS 323
N+ ++ L G + G NL F A +++ P+ NM P ++ +GT +
Sbjct: 210 NMVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269
Query: 322 ISTGISHG 299
T SHG
Sbjct: 270 TYTSASHG 277
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 148 TRAPFSIVSSPISCCKEGNSPTITALGESPSTAIS 252
+RA S++S I KE N+P+ITA SP +A S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPS 353
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 426 WLTTSMPSTTFPKTTCLPSSQEV 358
+L++S+P T+ P ++ LPSS ++
Sbjct: 198 YLSSSIPETSGPASSVLPSSSQL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,808
Number of Sequences: 5004
Number of extensions: 65887
Number of successful extensions: 233
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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