Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00224
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 137 9e-33
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 7e-31
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 3e-22
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 91 1e-18
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 5e-18
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 77 1e-14
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 75 4e-14
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 71 6e-13
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 64 1e-10
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 52 3e-07
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 40 0.001
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 36 0.022
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 33 0.27
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.63
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 31 0.84
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39) 30 1.5
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 30 1.5
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.5
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 137 bits (331), Expect = 9e-33
Identities = 59/81 (72%), Positives = 67/81 (82%)
Frame = +3
Query: 15 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 194
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 195 GGEFTNHNGTGGKSIYGNKFK 257
GG+FT HNGTGGKSIYG KF+
Sbjct: 197 GGDFTKHNGTGGKSIYGAKFE 217
Score = 133 bits (322), Expect = 1e-31
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DENF LKHTG GVLSMAN+G +TNGSQFF+TT KT WLDG+HVVFGNV+EG +VV ++E
Sbjct: 218 DENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEA 277
Query: 437 FGSQSGKTSKRIVIKDCGQIA 499
GSQSGK SK++VI DCG+++
Sbjct: 278 VGSQSGKASKKVVIDDCGELS 298
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 130 bits (315), Expect = 7e-31
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = +3
Query: 24 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGE 203
+FD+ + AP G+IV+ELR DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGG+
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65
Query: 204 FTNHNGTGGKSIYGNKF 254
FT +GTGGKSIYG KF
Sbjct: 66 FTRGDGTGGKSIYGAKF 82
Score = 127 bits (306), Expect = 9e-30
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DENF LKHTGPG+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VV +IE
Sbjct: 84 DENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEK 143
Query: 437 FGSQSGKTSKRIVIKDCGQI 496
GS SGKTSK++VI D +
Sbjct: 144 VGSDSGKTSKKVVIADSASV 163
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 102 bits (244), Expect = 3e-22
Identities = 45/79 (56%), Positives = 57/79 (72%)
Frame = +3
Query: 18 RVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 197
+V+ DV++ P G++++ L D PKT NF AL E+GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 198 GEFTNHNGTGGKSIYGNKF 254
G+FTN +GTGG SIYG F
Sbjct: 87 GDFTNKDGTGGYSIYGKYF 105
Score = 98.3 bits (234), Expect = 5e-21
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIE 433
DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG H FG V+EGM+VV +IE
Sbjct: 107 DENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIE 165
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 96.7 bits (230), Expect = 1e-20
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEV 418
DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDGRHVVFG V++GMEV
Sbjct: 126 DENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179
Score = 75.4 bits (177), Expect = 4e-14
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 18/97 (18%)
Frame = +3
Query: 18 RVFFDVTVDDAPLGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GEKGF 143
+VFFD+T+ G+I +I+ + + E NFR CT +KGF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 144 GYKGSIFHRVIPNFMLQGGEFTNHNGTGGKSIYGNKF 254
GYK SIFHRVI +FM+QGG+FT +GTGGKSIYG KF
Sbjct: 88 GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKF 124
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = +2
Query: 275 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIETFGSQSG 454
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV ++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247
Query: 455 KTSKRIVIKDCGQIA 499
+I++CG++A
Sbjct: 248 SPKSPCIIEECGELA 262
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/65 (61%), Positives = 48/65 (73%)
Frame = +2
Query: 302 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIETFGSQSGKTSKRIVIK 481
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV ++E + K +I
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60
Query: 482 DCGQI 496
D G +
Sbjct: 61 DSGTL 65
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +2
Query: 272 LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQI 430
L+H P +SMANAG +TNGSQFFIT V T WLD +H VFG VV+GM+V QI
Sbjct: 22 LRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQI 74
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 75.4 bits (177), Expect = 4e-14
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +2
Query: 293 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQI 430
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VV ++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/78 (39%), Positives = 48/78 (61%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG V+EG+ V++ +E
Sbjct: 59 DEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLEG 118
Query: 437 FGSQSGKTSKRIVIKDCG 490
+ + + + DCG
Sbjct: 119 QETFNERPKVECRVADCG 136
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVNQIET 436
DE F KH P +LSMAN G +TNGSQFFI HVVFG+V++G E+V QIE+
Sbjct: 39 DECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQIES 88
Query: 437 F-GSQSGKTSKRIVIKDCGQI 496
++ + + + + +CG++
Sbjct: 89 LPTNEKNRPNADVKVSNCGEL 109
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
Frame = +3
Query: 57 GKIVIELRSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 170
G+++ EL +D PKT ENFRALCTGEKG G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 47.6 bits (108), Expect = 9e-06
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 54 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEF 206
LG+I IEL +D P + NF A + G+ Y G+ FHRVIP FM+QGG F
Sbjct: 32 LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF 79
Score = 34.7 bits (76), Expect = 0.068
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +2
Query: 278 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVNQI 430
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV++I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +2
Query: 188 AARRGIHQP*RHWGKVHLRQ*V*DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSW 367
A R+ I P R W + L D H G +SMAN G ++NGSQFFI K
Sbjct: 273 AGRKAIQFPKRPWEE--LDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPH 330
Query: 368 LDGRHVVFG 394
LD ++ +FG
Sbjct: 331 LDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/65 (41%), Positives = 35/65 (53%)
Frame = +3
Query: 54 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGEFTNHNGTGGK 233
+G I IEL TPK C NF LC +G+ Y +IFHR++ +GGE N G G
Sbjct: 12 VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV-----KGGE--NIYGQSGF 61
Query: 234 SIYGN 248
+ GN
Sbjct: 62 KVTGN 66
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +2
Query: 380 HVVFGNVVEGMEVVNQIETF-GSQSGKTSKRIVIKDCGQI 496
HVVFG+V++G E+V QIE+ ++ + + + + +CG++
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 32.7 bits (71), Expect = 0.27
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = -2
Query: 490 TTVFDNDSLRGLPRLAAKGLNLVDNFHAFNNIPKDNMSAIQPGGLDSGDEELGTISISTG 311
T V +N + PR A +GL D F+ K+ MS I+PGG D +EE T S G
Sbjct: 431 TKVPENVQPKPKPRRAGEGLPHSDFKSGFSY--KEYMSGIRPGGPDMEEEEKATPQ-SNG 487
Query: 310 ISHGEDARS 284
+ E A+S
Sbjct: 488 DASDEKAQS 496
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -3
Query: 420 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 283
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 393 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 283
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 423 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 283
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 195 GGEFTNHNGTGGKSIYGNKFKTRISPLSTLDLASSP 302
G F +H G+ K GN+F+ ++P +A++P
Sbjct: 810 GNRFRHHGGSDSKPYCGNRFRHHVTPTLNYTVAATP 845
>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
Length = 432
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 28 STSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGNS 207
S +L T E LS V+ + + T+V C L ++ +S+ +SC + S
Sbjct: 346 SKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALS 405
Query: 208 PTITALGESPSTAIS 252
T++ ++ ST +S
Sbjct: 406 TTVSCQSKALSTTVS 420
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 34 SLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGNSPT 213
+L T E LS V+ + + T+V C L ++ +S+ +SC + S T
Sbjct: 359 ALSTTVSCELKALSTTVSCQLKALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTT 418
Query: 214 ITALGESPSTAIS 252
++ ++ ST +S
Sbjct: 419 VSCQSKALSTTVS 431
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 48 APLGKIVIELRSDVTPKTCENFRALCTG 131
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 396 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 283
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -3
Query: 396 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 283
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -3
Query: 441 PKVSIWLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 262
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 261 SS 256
+S
Sbjct: 145 TS 146
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 127 VHRARKFSHVLGV--TSLLSSITIFPSGASSTVTSKNTRGRDIL 2
+ + KF+H+ G+ TS T+F +T T TR RD++
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVI 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,116,923
Number of Sequences: 59808
Number of extensions: 510260
Number of successful extensions: 1527
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -