Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00223
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    27   0.18 
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    25   0.56 
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    25   0.75 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   5.3  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 200 QVQVVEP-LPKKPTLVMTWVGEQPELPSILLNSHMDVVPVFENSW 331
           Q  V+E  L K   ++ TWV     LP++LL     ++   +++W
Sbjct: 443 QADVIEKYLSKARYVIQTWVPASDNLPTLLLELGYRIIVSTKDAW 487


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 499 DWWHTGMGKFVQTDVFKNMNVGFALDEGVAS 591
           DWW+    K+  T ++KN        EG+ S
Sbjct: 97  DWWNELEAKYDPTGIYKNKYADELKAEGIVS 127


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 445 NRC-QAQKDCASVICT----RRGDWWHTGMGKFVQTDVFKNMNVGFALDEGV 585
           ++C Q QKD +  I       + DWW+    K+  T ++KN        EG+
Sbjct: 74  SKCSQRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIYKNKYADELKAEGI 125


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 267 GCSPTQVITNVGFFGKGST 211
           GCSP ++I  + F+G+  T
Sbjct: 256 GCSPKKLIVGIPFYGRTFT 274


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 70  QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 128

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 129 TSSTSSTEKAGTNNNNSKSGQSS 151


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFSLLTASMY*IPTDFIS*TPLA*I 370
           +D+  N  P  S PP+S+  +N   T    LT P+S S          T   + +  A  
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASS 172

Query: 369 TLSSISAAKGGCFQLFSKTGTTS 301
           T S+ S  K G     SK+G +S
Sbjct: 173 TSSTSSTEKAGTNNNNSKSGQSS 195


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = +1

Query: 502  WWHTGMGKFVQTDVFKNMNV----GFAL---DEGVASPNDDYLVFNGE 624
            W+  G+GK++ +D+  ++      GFA+   D+ +  P+D +  F+ +
Sbjct: 1834 WYRQGVGKYLPSDIDPDLCTHIVYGFAVLNGDQLIIKPHDTWADFDNK 1881



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 672 RFPSAPRQLRRKVAVHNRQVHG 737
           R+PS P    R  A  NR+++G
Sbjct: 36  RYPSGPELSDRSAAYTNRELYG 57


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFS 436
           +D+  N  P  S PP+S+  +N   T    LT P+S S
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVS 150


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 546 EDVRLNELPHSSMPPISSSGTNDRCTVLLSLT-PVSFS 436
           +D+  N  P  S PP+S+  +N   T    LT P+S S
Sbjct: 114 QDLSTNGAPPRSTPPLSTP-SNSNATKSSGLTSPLSVS 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,780
Number of Sequences: 336
Number of extensions: 4546
Number of successful extensions: 20
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)