Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00223
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 60 3e-10
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 29 0.62
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 28 1.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 1.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.5
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 3.3
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 26 5.8
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 26 5.8
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 5.8
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 60.5 bits (140), Expect = 3e-10
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +2
Query: 239 LVMTWVGEQPELPSILLNSHMDVVPVFENS---WKHPPFAAEIEDNVIYARGVQDMKSVG 409
L++T G +L ++L H DVVPV + S W PPF+A + +Y+RG D K+
Sbjct: 178 LLITLEGSNKDLKPLVLMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSV 237
Query: 410 IQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGG 508
+ +EA+ L + K ++TV SF DEE+ G
Sbjct: 238 VAILEALEILAISDYKPEQTVIASFGFDEEVSG 270
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 301 HMRVE*YARQLRLLSYPGHYQRRLLWQRFDHLHL*SNLFSFIFEEV--DAFIVVN 143
H + Y + HY R++LW + H + +FSF EE D ++ VN
Sbjct: 220 HQSLVVYTSDSNFEGHYNHYCRKILWPSLHYQH--NEIFSFFHEESNWDDYVAVN 272
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 30 RFAL-FPQCSEYIQQVQSRLTPASRPYR-TILEYVQYIR 140
RF L +P+C + I + +L P S PY LE + Y+R
Sbjct: 378 RFRLAYPECFQIISSLCDKLGPHSDPYLIPALEVIDYLR 416
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 59 IHTTSSVKIDPSVSTLQNYIRIRSVHPNVDYNECINFLKNEAEKIG 196
+HT S ++ S+S L N I VH N + I+ ++G
Sbjct: 269 LHTVDSTNVNGSLSPLSNSSSINQVHQNETHGSTISVPNPNLSQMG 314
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 543 DVRLNELPHSSMPPISSSGTNDRCTVLLSLTPVSFSLLTASMY*IPTD 400
D+ NE+P+ + PP S N++ T L +S S L+ + P D
Sbjct: 413 DLHTNEIPNVAQPPSSFEKENNKDTSKLENPDISSSPLSPTEDLFPND 460
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +3
Query: 12 SDATVHRFAL---FPQCSEYIQQVQSRLTPASRPYRTILEYVQYIRTLTTMNASTSSKMK 182
+DA F + FP+ + ++ +QSR+ A YR IL R K++
Sbjct: 194 ADAVYRAFIMLKYFPRWVQKLRNIQSRIYSAGEAYRLILIGQMVNRWRQKTRERLHQKLR 253
Query: 183 LKR----LDYKCKWSNL 221
++ LD KWS L
Sbjct: 254 FQKNAFLLDVLLKWSAL 270
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 606 PGLQWRKNNLACENHLSRKIRSRFPSAPRQLRRKVAVHNRQV 731
P L+ + CE + RK +R P R+K H Q+
Sbjct: 80 PSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 606 PGLQWRKNNLACENHLSRKIRSRFPSAPRQLRRKVAVHNRQV 731
P L+ + CE + RK +R P R+K H Q+
Sbjct: 80 PSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 134 HPNVDYNECINFLKNEAEKIGLQVQVVEPLPKKPTLVMTWVGEQPELPSILLNSHMDVVP 313
HP D EC + +++E K L+ +EP + +T + E S LL +
Sbjct: 199 HPVYDIEECADGVEHECVKDDLEEVKLEPYTNTDSTDLT---TKEEARSFLLKQQLTAFI 255
Query: 314 VFENS 328
+ E+S
Sbjct: 256 ILESS 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,070
Number of Sequences: 5004
Number of extensions: 79030
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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