Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00223
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 140 2e-33
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 95 1e-30
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 40 0.003
12_01_0723 - 6360652-6360753,6360898-6361239 30 2.0
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 30 2.0
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 30 2.0
01_06_1287 + 36004909-36006279 30 2.0
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 30 2.6
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 4.6
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234... 29 4.6
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 8.1
03_05_0555 + 25555081-25555432,25555488-25555699 28 8.1
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 140 bits (338), Expect = 2e-33
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 6/165 (3%)
Frame = +2
Query: 32 FCLISAML-RIHTTSSVKIDPS-VSTLQNYIRIRSVHPNVDYNECINFLKNEAEKIGLQV 205
F L+SA++ R + +++ + + Q+Y+RIR+ HP+ DY FL A +GL+
Sbjct: 18 FLLLSAVVARPAAGAFTELESAQIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLGLRA 77
Query: 206 QVVE--PLPKKPTLVMTWVGEQPELPSILLNSHMDVVPVFENSWKHPPFAA--EIEDNVI 373
+ P KP L++TW G P LPS+LLNSH+D VP W HPPFAA + +
Sbjct: 78 ATLHFTPCKSKPLLLLTWPGTDPSLPSLLLNSHLDSVPAEPEQWLHPPFAAHRDAATGRV 137
Query: 374 YARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGG 508
YARG QD K + IQY+EA+R L++ G RT+H+S VPDEEIGG
Sbjct: 138 YARGAQDDKCLPIQYLEAIRGLRDAGFAPTRTLHISLVPDEEIGG 182
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/78 (38%), Positives = 45/78 (57%)
Frame = +1
Query: 514 GMGKFVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPD 693
G KF Q++ F+++NVGF LDEG AS D++ VF G+R++W + + G GHGS L
Sbjct: 185 GFEKFAQSEEFRDLNVGFMLDEGQASLTDEFRVFYGDRLVWRLIVKATGAPGHGSKLFDG 244
Query: 694 NCGEKLRYIIDKFMDLRQ 747
E L ++ R+
Sbjct: 245 AAVENLMDCVETIAGFRE 262
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 95.5 bits (227), Expect(2) = 1e-30
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Frame = +2
Query: 68 TSSVKIDPSVSTLQNYIRIRSVHPNVDYNECINFLKNEAEKIGLQVQVVEPLPKKPTLVM 247
+SS + VS + Y+RI + P DY + FL+ +A GL+ + +E + KP L++
Sbjct: 22 SSSDAEEAVVSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLL 81
Query: 248 TWVGEQPELPSILLNSHMDVVPVFENSWKHPPFAAEIED--NVIYARGVQ 391
W G +P LPS+LLNSH DVVP + W HPPF+A +++ IYARG Q
Sbjct: 82 RWPGRRPSLPSLLLNSHTDVVPSEPHKWDHPPFSAALDEASGRIYARGSQ 131
Score = 68.1 bits (159), Expect = 8e-12
Identities = 33/79 (41%), Positives = 44/79 (55%)
Frame = +1
Query: 508 HTGMGKFVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLL 687
H G+ FV + FK+MNVG LDEG+ASP ++Y VF GER W + I G GHG+ L
Sbjct: 201 HEGIEAFVASKEFKDMNVGLVLDEGLASPGEEYRVFYGERSPWWLTIKAKGAPGHGAKLY 260
Query: 688 PDNCGEKLRYIIDKFMDLR 744
+ E L ++ R
Sbjct: 261 DGSAMENLMKSVEAIRRFR 279
Score = 56.4 bits (130), Expect(2) = 1e-30
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +2
Query: 392 DMKSVGIQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGG 508
DMK VG+QY+EA+RRL+ G R ++L+FVPDEEIGG
Sbjct: 162 DMKCVGMQYLEAIRRLRSAGFIPDRNIYLTFVPDEEIGG 200
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 39.5 bits (88), Expect = 0.003
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Frame = +2
Query: 197 LQVQVVEPLPKKPTLVMTWVGEQPELPSILLNSHMDVVPVFENSWKHPPFAA--EIED-N 367
L V+ V + +++ + G P + HMDVVP + W PF+ + ED +
Sbjct: 66 LVVRKVSYAEGRSNVIVEYPGTVPGRAISFVGMHMDVVPANPDEWDFDPFSLTFDSEDKD 125
Query: 368 VIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVHLSFVPDEE 499
+ RG D + +RRL E LK +V F+ +EE
Sbjct: 126 KLRGRGTTDCLGHVALVAQLMRRLGEVKPVLKHSVIAVFIANEE 169
>12_01_0723 - 6360652-6360753,6360898-6361239
Length = 147
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +2
Query: 179 EAEKIGLQVQVVEPLPKKPTLVMTWVGEQPELPSILLNSHMDVVPVFENSWK-HPPFAAE 355
EAE L VE + L+ V E+P +P+IL+N V + NS K + +
Sbjct: 2 EAELTALDTATVEAKWLRELLMDLPVVEKP-VPAILMNCDNQTVIIKVNSSKDNMKSSRH 60
Query: 356 IEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVK-LKRTV 472
++ + Y R ++ + + Y++ R L + K L R V
Sbjct: 61 VKRRLKYVRKQKNSGVIALDYVQTARNLADQFTKGLPRNV 100
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 282 MLGSSGCSPTQVITNVGFFGKGSTTCT--CSPIFSASFLRKLMHSL*STFG-CT 130
++GS+G PT + FF K +T C F+A+F L H ST G CT
Sbjct: 135 VVGSTGIGPTNLTDTPFFFSKRNTLVATGCYSNFTATFTSSLHHHGWSTNGSCT 188
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 272 LPSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETG 451
LP ++L++ +PV KH P + + R + ++ SVG+ + R + G
Sbjct: 775 LPHVILSA----IPVI----KHNP---DFMSGKVAFRNIMNIVSVGVDTLINERTTQTYG 823
Query: 452 VKLKRTVHLSF 484
+ L++TVHLSF
Sbjct: 824 ILLEKTVHLSF 834
>01_06_1287 + 36004909-36006279
Length = 456
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 407 GIQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGGILEWGSSFRRTS 544
G + ++A RR+K TG+KL R L + G+++ G S RT+
Sbjct: 255 GEEALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTA 300
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 439 EGNRCQAQKDCASVICTRRGDWWHTGMGKFVQTDVFKNMNVGF 567
EG A DC S CT G WH + K V+K +V +
Sbjct: 144 EGREISACLDCESRFCTTHGK-WHASVNKHWVALVYKKPHVAY 185
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 65 TTSSVKIDPSVSTLQNYIRIRSVHPNVD 148
T S+ KID + TL+NY+++ H + D
Sbjct: 1288 TVSNDKIDENAHTLENYVKMLRAHQSAD 1315
>03_05_0195 -
21822418-21822441,21822480-21822659,21823337-21823453,
21824347-21824412,21825592-21825683,21825924-21825987,
21826098-21826176,21826248-21826387,21827253-21827334,
21827565-21827572,21828005-21828103,21828208-21828285,
21828379-21828472,21828726-21828823,21830299-21830502
Length = 474
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +2
Query: 317 FENSWK-----HPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVHLS 481
F+N W+ P E DN++ DM ++Y+E V +LKE VK +
Sbjct: 257 FKNLWETHQYSRVPVFEERIDNIVGIAYAMDM----LEYVEEVEKLKEITVKEIAHMPTY 312
Query: 482 FVPD 493
FVPD
Sbjct: 313 FVPD 316
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 141 TLTTMNASTSSKMKLKRLDYKCKWSNLCQ 227
T T NA ++K+ L R Y+ W+ LCQ
Sbjct: 2155 TPTRSNAGDATKVTLARTWYQALWATLCQ 2183
>03_05_0555 + 25555081-25555432,25555488-25555699
Length = 187
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 193 WTTSAS-GRTFAKEADVGNDLGRRAA*AAEHITQLSYGRGACLREQLE 333
W S+ G A EAD +DLGR + +T S R C R+++E
Sbjct: 94 WRKSSKVGGAEAMEADANSDLGREEM-SCRELTGASKSRRWCRRDRME 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,372,731
Number of Sequences: 37544
Number of extensions: 516676
Number of successful extensions: 1626
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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