Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00223
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         64   2e-10
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)                     30   2.0  
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  29   4.7  
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            29   4.7  
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  
SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)                  29   6.2  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   8.2  
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   8.2  

>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +2

Query: 257 GEQPELPSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRR 436
           G    L   ++ SH+DVVP    SW  PPF   ++D  I+ RG  D+K+  +  +EAV+ 
Sbjct: 454 GSNSTLRPYMIASHLDVVPA-PGSWDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQA 512

Query: 437 LKETGVKLKRTVHLSFVPDEEIGG 508
           L + G K KR+ +L++  DEE+ G
Sbjct: 513 LLKLGQKPKRSFYLAYGHDEEVQG 536


>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
          Length = 1072

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 397 EVGWNSVH*GREEAEGNRCQAQ-KDCASVICTRRGDWW 507
           E  W  V   R E+   +C+   KD  S++C ++ +WW
Sbjct: 514 ERAWRQV--ARNESLNTKCKLNNKDLVSLVCLQKAEWW 549


>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 474 ICHLYPTRRLVAYWNGEVRSDG 539
           I  LYP RRL A+W+ +   +G
Sbjct: 88  ITRLYPQRRLAAFWHSDASEEG 109


>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 93  ASRPYRTILEYVQYIRTLTTMNASTSSKMKLKRLDYKCKWSNLCQR 230
           +SR  R +LE  +YI T+ TM+ S +     + +DY    +N+  R
Sbjct: 178 SSRKKRAVLE-TKYIETMITMDKSATDYYGNRSMDYALAVANMASR 222


>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 481 ICTRRGDWWHTGMGKFVQTDVFKNMNVGFALDEGVAS 591
           IC+R   +W   + + ++T +F NM+ G     G A+
Sbjct: 160 ICSRGNGYWSAAVSRAMRTGLFPNMHSGMLSVAGTAN 196


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 308  VPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVH-LSF 484
            +P  E +++    A+E++D  +   G Q +  V  Q  + +RR K     +   V+  SF
Sbjct: 1005 LPEDERAFRWMLRASELKDGHLLVGGAQHLMLVDTQIKQIIRRFKVLSQPMLNVVYPFSF 1064

Query: 485  VPDEEI 502
            + DE++
Sbjct: 1065 LDDEKL 1070


>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
          Length = 1150

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 684 QKGTVTGFSGTSDFHMPNYSFAIEDQVV 601
           +K T+TGF GT     PN   AI+D+VV
Sbjct: 268 EKSTLTGFGGTEPLD-PNIIAAIKDEVV 294


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 336 CFQLFSKTGTTSI*ELSNMLGSSGCSPTQVITNVGFFGKGSTTCTCSP 193
           C  + S      I E   +LGS+ C      TN    G G+ +CTC P
Sbjct: 457 CTVVTSSMNPLDINECDPILGSNDCGANTDCTN----GPGNYSCTCKP 500


>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 336 CFQLFSKTGTTSI*ELSNMLGSSGCSPTQVITNVGFFGKGSTTCTCSP 193
           C  + S      I E   +LGS+ C      TN    G G+ +CTC P
Sbjct: 283 CTVVTSSMNPLDINECDPILGSNDCGANTDCTN----GPGNYSCTCKP 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,806,836
Number of Sequences: 59808
Number of extensions: 585342
Number of successful extensions: 1616
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)