Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00223
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 442  GNRCQAQKDCASVICTRRGD---WWHTGMGKFVQTDVFKNMNV 561
            G+  +  +  A++ C   GD    W+ G G+ ++TD  +N+ +
Sbjct: 1321 GHVVRPWRGSATLACNAVGDPTREWYKGQGEQIRTDSTRNIQI 1363


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 442  GNRCQAQKDCASVICTRRGD---WWHTGMGKFVQTDVFKNMNV 561
            G+  +  +  A++ C   GD    W+ G G+ ++TD  +N+ +
Sbjct: 1317 GHVVRPWRGSATLACNAVGDPTREWYKGQGEQIRTDSTRNIQI 1359


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 RIRSVHPNVDYNECINFLKNEAEK 190
           R+ S H N  Y+E I FL+ E  K
Sbjct: 597 RLTSKHDNSLYDEYIPFLERELRK 620


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 666 GFSGTSDFHMPNYSFAIEDQVV-IVRGCDALIESEPDIHIFEDVRLN 529
           G   T+D  + + S+  +D    I +  D L+E+EP  +    V+LN
Sbjct: 175 GTLATNDNILESISYVKDDGTEGIAKSGDVLVETEPIYYNLTMVKLN 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,630
Number of Sequences: 438
Number of extensions: 5739
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)