Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00222X
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    94   1e-20
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    57   1e-09
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   0.38 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    28   0.88 
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   1.2  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.0  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    27   2.0  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   4.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   4.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 41/75 (54%), Positives = 56/75 (74%)
 Frame = +2

Query: 263 DPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGPS 442
           DP + L+ +RL  +KHKIL+LSGKGGVGKST +S +  GL S+  D+ +G++D DICGPS
Sbjct: 46  DPDLPLVVERLKEIKHKILVLSGKGGVGKSTFSSQLAWGL-SLEEDKQIGLMDVDICGPS 104

Query: 443 QPRVLGVRGEQVHNS 487
            PR++GV  E+ H S
Sbjct: 105 IPRIMGVEKEEAHQS 119



 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +3

Query: 141 SVPDNAPQHCPGTQSEDAGKASACAGCPNQNICAS 245
           +VP +AP+HCPG  SE+AG ASAC GCPNQ ICAS
Sbjct: 6   TVPLDAPEHCPGPSSENAGTASACEGCPNQQICAS 40


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
 Frame = +2

Query: 293 LSNVKHKILILSGKGGVGKSTVTSIIG---HGLASMSPDRNVGILDADICGPSQPRVLGV 463
           +  V+H IL+LSGKGGVGKS+VT+ +    H     S     GILD D+ GPS PR+ G 
Sbjct: 1   MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60

Query: 464 RGE--QVHNS 487
             E  ++H S
Sbjct: 61  DAERNRIHQS 70


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
 Frame = +2

Query: 248 RSTQPDPAVELIKQRLSNVKH-KILILSGKGGVGKST--VTSIIGHGLASMSPD 400
           R  +  PA E  ++ +  ++H +++++SG+ G GKST  V  I+ H L+S   D
Sbjct: 572 REREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKD 625


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 263 DPAVELIKQRLSNVKHKILILSGKGGVGKSTVT 361
           DP    ++  L     K + + GKGGVGK+T +
Sbjct: 4   DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTS 36


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 320 ILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGPSQPRVLGVRGEQVHNSG 490
           ++ G  G GK+  ++ + + LA+M   +        +C PS   V     E++H +G
Sbjct: 411 LIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAV-DQLAEKIHRTG 466


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 230 KHLRIWRSTQPDPAVELIKQR 292
           K LR+W STQPD  +EL+ Q+
Sbjct: 84  KCLRLWDSTQPD-KIELLYQK 103


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 299 NVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILD 421
           N+ H  L++SG  G+GK+T    + H L  + P    G+L+
Sbjct: 53  NMPH--LVISGMPGIGKTTSILCLAHAL--LGPAYKEGVLE 89


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 311 KILILSGKGGVGKSTVTSIIGH 376
           +I++L+G  G GK+T+  +I H
Sbjct: 417 RIMMLTGLAGAGKTTLAHVIAH 438


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 435 PQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPPLPDK 322
           P+  A  IP  L+   D RP       V FP PP   K
Sbjct: 294 PEGHAKMIPCLLAWNPDVRPTAKYCKEVFFPLPPSASK 331


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 154  TRRNIALELKARMLVKLQPVLDAL 225
            ++RNI L L+ RM++++ P  D+L
Sbjct: 2054 SKRNILLNLEHRMMLQMAPDCDSL 2077


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 21  KIFLICNEFVQINSILLNHSIRELGF*RINSRQIVISNMSSVPDNAPQH-CPGTQSEDAG 197
           K+F IC+ F  ++S + N  + +L    I+S   ++ +M S   NA     P T  E  G
Sbjct: 59  KLFAICSHFADLSSSVRN-KVYDLLTSNISSESAILEDMISA--NATDFTVPQTNLETTG 115

Query: 198 KA 203
            A
Sbjct: 116 IA 117


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +2

Query: 308 HKILILSGKGGVGKSTVTSII----GHGLASM--SPDRNVGILDADICGPSQPRVL 457
           +K ++LSG  G+GK+T   ++    G+ +  +  S  R+  +LD  + G +  + L
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRSKRLLDEQLFGVTDSQSL 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,512
Number of Sequences: 5004
Number of extensions: 42519
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)