Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00222X
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 90 1e-18
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 85 2e-17
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 47 9e-06
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 43 2e-04
03_02_0315 - 7401708-7401860,7401962-7402123,7402211-7402279,740... 37 0.010
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 33 0.16
06_01_0042 + 410061-410544,411401-411837 32 0.22
07_01_1147 + 10771305-10771619,10771991-10772077 31 0.66
09_04_0258 - 16175258-16176069,16176111-16176414 30 0.88
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 30 1.2
03_02_0930 - 12480983-12481888 29 1.5
10_08_0965 + 21915842-21916906 29 2.0
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 29 2.0
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 29 2.0
04_03_0395 - 15356255-15356292,15356507-15356620,15356728-153568... 29 2.7
04_03_0332 + 14535793-14535921,14536003-14537037 29 2.7
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069... 28 3.5
11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229 28 3.5
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 28 3.5
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 28 3.5
07_03_0613 + 19959206-19959700,19960210-19960657,19960753-199609... 28 4.7
07_01_0939 + 7939716-7940220,7940675-7941564 28 4.7
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188... 28 4.7
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 4.7
01_06_1280 - 35959452-35960105 28 4.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 4.7
11_06_0050 + 19631164-19631987,19632103-19634023 27 6.2
11_01_0791 + 6627961-6630702 27 6.2
08_02_0075 - 11953723-11956203,11958213-11958512 27 6.2
03_06_0404 + 33692534-33693607 27 6.2
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 6.2
12_01_0646 + 5474234-5476189 27 8.2
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 27 8.2
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 27 8.2
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 8.2
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 27 8.2
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 27 8.2
02_04_0238 + 21186072-21186883,21187315-21189346 27 8.2
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 27 8.2
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/76 (55%), Positives = 56/76 (73%)
Frame = +2
Query: 260 PDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGP 439
PDP + I +R++ VKHKIL+LSGKGGVGKST ++ + LA M D VG+LD DICGP
Sbjct: 54 PDPDLVGIVERMATVKHKILVLSGKGGVGKSTFSAQLSFALAEM--DCQVGLLDIDICGP 111
Query: 440 SQPRVLGVRGEQVHNS 487
S P++LG+ G+ +H S
Sbjct: 112 SIPKMLGLEGQDIHQS 127
Score = 66.9 bits (156), Expect = 8e-12
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +3
Query: 138 SSVPDNAPQHCPGTQSEDAGKASACAGCPNQNICAS 245
S VP +A +HCPGTQSE+AGKA ACAGCPNQ ICA+
Sbjct: 14 SDVPADANEHCPGTQSEEAGKADACAGCPNQQICAT 49
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 85.4 bits (202), Expect = 2e-17
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +2
Query: 281 IKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGPSQPRVLG 460
I +R++ VKHKIL+LSGKGGVGKST ++ + LA M D VG+LD DICGPS P++LG
Sbjct: 57 IIERMNTVKHKILVLSGKGGVGKSTFSAQLSFALAEM--DHQVGLLDIDICGPSIPKMLG 114
Query: 461 VRGEQVHNS 487
+ G+ +H S
Sbjct: 115 LEGQDIHQS 123
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +3
Query: 144 VPDNAPQHCPGTQSEDAGKASACAGCPNQNICAS 245
VP+NA HCPGTQSE AGKA ACAGCPNQ ICA+
Sbjct: 8 VPENANDHCPGTQSEAAGKADACAGCPNQQICAT 41
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 46.8 bits (106), Expect = 9e-06
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 293 LSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGPSQPRVLGVRGE 472
++ V I + SGKGGVGKST I LA VG+LDADI GPS P ++ + +
Sbjct: 27 IAGVSDIIAVASGKGGVGKSTTAVNIAVALAKKF-QLKVGLLDADIYGPSIPTMMNLHAK 85
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +2
Query: 239 RIWRSTQPDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGIL 418
R+ +T P ++ +++ + V + + KGGVGKSTV + + LA M VGI
Sbjct: 117 RLELTTPACPIKDMFEEKANEVVAALPWVK-KGGVGKSTVAVNLAYTLAGMG--ARVGIF 173
Query: 419 DADICGPSQPRVL 457
DAD+ GPS P ++
Sbjct: 174 DADVFGPSLPTMV 186
>03_02_0315 -
7401708-7401860,7401962-7402123,7402211-7402279,
7403332-7403596,7404613-7404737,7404826-7404933,
7405102-7405249,7406013-7406065
Length = 360
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 284 KQRLSNVKHKILILSGKGGVGK-STVTSIIGHGLASMSPDRNVGI 415
K + NV +++ GKGGVGK STV SI+G +A++S ++ G+
Sbjct: 63 KLKEENVSTLTILVMGKGGVGKSSTVNSIVGERVATVSAFQSEGL 107
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 260 PDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLAS 388
PDP V + L K + + GKGGVGK+T +SI+ LAS
Sbjct: 11 PDPTV---RNLLEQESLKWVFVGGKGGVGKTTCSSILSILLAS 50
>06_01_0042 + 410061-410544,411401-411837
Length = 306
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 314 ILILSGKGGVGKSTVTSIIGHGLASMS 394
+++ SGKGGVGK+T T+ + LA +S
Sbjct: 39 VVVTSGKGGVGKTTTTANLAASLARLS 65
>07_01_1147 + 10771305-10771619,10771991-10772077
Length = 133
Score = 30.7 bits (66), Expect = 0.66
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 411 VYSMPTSAARASREYWASAENRSTTPA 491
V + P +AA S E WA+A R+TTP+
Sbjct: 72 VAASPAAAAAGSGEQWATATGRATTPS 98
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 328 R*RGGRKKYCDINNWARSCINES**KRRYTRCR--HLRPEPAASTGRPRRTG 477
R R GR+ D+++ A +C ++ RR T R H +PE +S+ RP R G
Sbjct: 167 RQRHGRRHDDDVDDAAAACAADAEGARRPTDQRRGHGQPEATSSSARPARAG 218
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 230 KHLRIWRSTQPDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGH 376
+H R T+ D +EL+ ++ + +L L G GGVGK+T+ + H
Sbjct: 236 EHKVYGRDTERDNIIELLT-KVKSCDLGVLPLVGVGGVGKTTLARFVYH 283
>03_02_0930 - 12480983-12481888
Length = 301
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 129 SNMSSVPDNAPQHCPGTQSEDAGKASACAGCPNQ 230
S+ S+VP AP+ P + G + C CPN+
Sbjct: 38 SDASAVPPAAPRQPPAAAAPAGGLSPCCCYCPNR 71
>10_08_0965 + 21915842-21916906
Length = 354
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 375 CPIIDVTVLFPTPPLPDKIRI 313
CP+ ++ P PPLPD +R+
Sbjct: 167 CPLCRASIALPHPPLPDLLRV 187
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 462 TPSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPPLPDKIRI 313
TP R L ++A S+ ++ + A PI+ VT F P PDK+ +
Sbjct: 13 TPVARRRLMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNV 62
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 293 DVVLSVLLRGQVECFSRCANVLIRASST 210
D+V+S L++G V F+R NV +R+S T
Sbjct: 522 DIVVSGLVQGTVINFNRARNVTVRSSGT 549
>04_03_0395 -
15356255-15356292,15356507-15356620,15356728-15356809,
15356862-15357236,15357256-15357320,15357534-15357662,
15357759-15357854,15357959-15357983
Length = 307
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = -3
Query: 361 CHSTFSDPPFTGQDQNFVLYIGET------LFYQFYCGVRLSASPDAQMF*LGHPAQAEA 200
CH ++ P ++ + V GE ++ C V LSASP++ + + + +
Sbjct: 113 CHMRYNFPAYSSKTLRIVNGSGEVHFGVNDIYTMSLCNVALSASPESSKYIVAASSDHKG 172
Query: 199 LPASSL*VPG 170
P +L PG
Sbjct: 173 APVPALWQPG 182
>04_03_0332 + 14535793-14535921,14536003-14537037
Length = 387
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = -3
Query: 361 CHSTFSDPPFTGQDQNFVLYIGET------LFYQFYCGVRLSASPDAQMF*LGHPAQAEA 200
CH ++ P ++ + V GE ++ C V LSASP++ + + + +
Sbjct: 118 CHMRYNFPAYSSKTLRIVNGSGEVHFGVNDIYTMSLCNVALSASPESSKYIVAASSDHKG 177
Query: 199 LPASSL*VPG 170
P +L PG
Sbjct: 178 APVPALWQPG 187
>12_02_0496 +
19704429-19704613,19705874-19706736,19706764-19706951,
19707190-19708200
Length = 748
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/32 (28%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +2
Query: 278 LIKQRLSNVKHK-ILILSGKGGVGKSTVTSII 370
++++ L +H+ ++++ G GG+GK+T+ S++
Sbjct: 85 IMERLLQPTEHREVIVIVGMGGIGKTTLASLV 116
>11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229
Length = 632
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 278 LIKQRLSNVKHKILILSGKGGVGKSTVTSII 370
LIK+ + +L + G+GG+GKST+ +
Sbjct: 197 LIKKSAFEASYMVLAIVGQGGMGKSTLAQYV 227
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 233 HLRIWRSTQPDPAVELIKQRLSNVKHKILILSGKGGV 343
H W T + A L QRL++ H+IL++ GGV
Sbjct: 115 HEWAWAGTPTEGAAWLRLQRLADTWHRILLIPVTGGV 151
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 28.3 bits (60), Expect = 3.5
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 266 PAVELIKQRLSNVKHKILILSGK--GGVGKSTVTSIIGHGLASMSPDRNVGILDADICGP 439
PA+EL K L+ K++ L+L G GG + T I LAS SP + L
Sbjct: 260 PALELYK--LAQKKNRKLVLCGHSLGGAVAALATLAILRVLASSSPSKEPDRLQVKCITF 317
Query: 440 SQPRV 454
SQP V
Sbjct: 318 SQPPV 322
>07_03_0613 +
19959206-19959700,19960210-19960657,19960753-19960940,
19961317-19961637
Length = 483
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 337 PFTGQDQNFVLYIGETLFYQFYCGVRLSASPDAQMF*LGHPAQAEALPASS 185
PF GQ +F+ + +Q+Y G P ++M+ G PA A PA++
Sbjct: 40 PFVGQSISFLRALRSNTDHQWYQGRIGKYGPVSKMWLFGSPAVLMAGPAAN 90
>07_01_0939 + 7939716-7940220,7940675-7941564
Length = 464
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 281 IKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLA 385
+KQR +K KILI GG + + ++ H L+
Sbjct: 429 VKQRADELKKKILICLKNGGSTQQAIDKLVDHMLS 463
>02_05_0553 -
29918289-29918361,29918505-29918617,29918694-29918801,
29918991-29919206,29919284-29919559,29919720-29919824,
29919925-29920379,29920746-29920940,29921237-29921639,
29922006-29922518
Length = 818
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 233 HLRIWRSTQPDPAVELIKQRLSNVKHKILILSGKGGV 343
H W T + A L QRL++ H+IL++ GGV
Sbjct: 176 HEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGV 212
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 469 SADAQYSRLARAADVGIEYTYVSIRTH 389
+A Y+++ARA+D+G T ++RTH
Sbjct: 676 AAGVAYAQVARASDLGKNDTIFTVRTH 702
>01_06_1280 - 35959452-35960105
Length = 217
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 177 TQSEDAGKASACAGCPNQNICASGEALNLTPQ*N 278
T++ D GKA+A C +C LNLTP N
Sbjct: 159 TKNGDVGKAAAVKACDGGGVCLD---LNLTPSEN 189
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 269 AVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLA 385
+V ++ R+SN + I G GV VT + GHG++
Sbjct: 516 SVRILNSRISNGDDCVSIGGGCSGVRVENVTCVHGHGIS 554
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 311 KILILSGKGGVGKSTVTSIIGHGL 382
K++ + G GG+GK+T+ S++ H L
Sbjct: 193 KVVSIVGFGGLGKTTLASVVYHKL 216
>11_01_0791 + 6627961-6630702
Length = 913
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 308 HKILILSGKGGVGKSTV 358
HK++ +SG GG+GK+T+
Sbjct: 192 HKVITVSGMGGLGKTTL 208
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 272 VELIKQRLSNVKHKILI-LSGKGGVGKSTVTSIIGH 376
+ELI S+ + +++ + G GGVGK+T+ ++ H
Sbjct: 198 IELINSAASSDQELLVVPIVGAGGVGKTTLARLVYH 233
>03_06_0404 + 33692534-33693607
Length = 357
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 266 PAVELIKQRLSNVKHKILILSGKGGVGKS 352
P L+ + + VKHK +++ G G GKS
Sbjct: 38 PVAPLVLRHGAGVKHKAVVVMGATGTGKS 66
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 233 HLRIWRSTQPDPAVELIKQRLSNVKHKILILSGK-GGVGKSTV 358
+LR+ STQP+ L+++ +N K + ILS + GGVG + V
Sbjct: 1246 YLRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLV 1288
>12_01_0646 + 5474234-5476189
Length = 651
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 287 QRLSNVKH-KILILSGKGGVGKSTVTSIIGH 376
Q N H I+ + G GG+GK+T+ +I H
Sbjct: 214 QDAKNNNHVPIMSIVGHGGIGKTTLAQLISH 244
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 RSTQPDPAV-ELIKQRLSNVKHKILILSGKGGVGKSTVTSII 370
R Q D + +L + + K IL + G GG+GK+T+ ++
Sbjct: 261 RDQQRDLIISKLTSEECARKKLSILAIIGDGGIGKTTLAKLV 302
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 296 SNVKHKILILSGKGGVGKSTVTSII 370
SN K KI+ + G GG+GK+T+ + +
Sbjct: 195 SNRKTKIVYVVGMGGLGKTTLATAV 219
>06_03_0783 -
24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 299 NVKHKILILSGKGGVGKSTVTSII 370
+V +++ + G GG+GK+T+T +I
Sbjct: 243 SVSPEVITIVGTGGIGKTTLTQLI 266
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 296 SNVKHKILILSGKGGVGKSTVTSII 370
++V IL + G GGVGK+T+T ++
Sbjct: 191 NHVNLSILPIVGMGGVGKTTLTQLV 215
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 144 VPDNAPQHCPGTQSEDAGKASACAGCPNQNI 236
VPDNA CP + + +A CP+Q++
Sbjct: 569 VPDNASLPCPEQHVPEETQINAGLSCPDQHL 599
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 266 PAVELIKQRLSNVKH-----KILILSGKGGVGKSTVTSIIGHGLASMSPDR 403
P +ELI+ V K++ + G GG+GK+T+ + + H L + R
Sbjct: 173 PKIELIRWLTEGVSGPEQQLKVVPIVGSGGLGKTTLANQVYHNLEGIFESR 223
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 275 ELIKQRLSNVKHKILILS--GKGGVGKSTVTSII 370
+L+ N K+K+ ++S G GG+GK+T+ ++I
Sbjct: 178 KLLMDSKGNSKNKLKVISIVGVGGLGKTTLANVI 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,493
Number of Sequences: 37544
Number of extensions: 311415
Number of successful extensions: 1195
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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