Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00222X
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)                  33   0.17 
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)                  30   0.90 
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)                     30   0.90 
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 29   2.1  
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05)                 29   2.8  
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)                  29   2.8  
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   4.8  
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   4.8  
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)                 27   6.4  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   27   6.4  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)           27   8.4  
SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)                   27   8.4  
SB_22786| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 284 KQRLSNVKHKILILSGKGGVGKST 355
           K  ++ VK  IL+ SGKGGVGKST
Sbjct: 59  KWPIAGVKQVILVASGKGGVGKST 82


>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
          Length = 415

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 269 AVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDAD 427
           A++ I ++  N K  +L ++G GG GKS++   +        P++ +G++  D
Sbjct: 70  ALDTIHKKNKNSKTPVLGITGTGGAGKSSLVDELVRRFLIDFPEKTIGLISVD 122


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 323 LSGKGGVGKSTVTSIIGHGLAS 388
           L  +GGVGKST T+ + HGLA+
Sbjct: 243 LQTQGGVGKSTFTAHLAHGLAA 264


>SB_23100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 272 VELIKQRLSNVKH-KILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADIC 433
           V+ + + +S+  H ++ ++SG  G GKS ++    H L     + + G LD DIC
Sbjct: 84  VKQVLREMSDTSHPQVFVMSGCNGSGKSWLS----HALVRQIMEESEGGLDTDIC 134


>SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)
          Length = 178

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 483 LWTCSPRTPSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPP 334
           L    P+TP  +   G  +    IP+  SG +   P P I+V +L PT P
Sbjct: 41  LTNAPPQTPPAKLIKGLPLPPRIIPSNTSGRVLDEPVPEINVPILKPTQP 90


>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
          Length = 280

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 293 LSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICG 436
           L   K + +++SG+ G GK+  T +I H L ++S       ++  I G
Sbjct: 227 LKEKKSQCIVISGESGSGKTESTKLIVHHLTALSRKTQASDVEKTILG 274


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 314 ILILSGKGGVGKSTVTS-IIGHGLASMSPDRN 406
           +++LSGKGG GK+ V S ++    + +SP+ N
Sbjct: 457 VVVLSGKGGCGKTYVVSKVLSEANSHISPNSN 488


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 263  DPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGPS 442
            D A+ L+     +   KIL LSG   +G +T+ +I+       +P   +G LD   CG  
Sbjct: 838  DSALSLVTLIQESALLKILNLSGNPSLGNTTLHAIL--NTLMDTPLSQLGTLDLSSCGVR 895

Query: 443  QP 448
             P
Sbjct: 896  SP 897


>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +2

Query: 245 WRSTQPDPAVELIKQRLSNVKHKI-----LILSGKGGVGKSTVTSI 367
           W     +PAV L+ +RLS + +K+     L++SG+G  G   + +I
Sbjct: 610 WSPDAVEPAVNLVLKRLSKIFNKLIHKPDLVVSGEGSHGLRVILTI 655


>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 123  VISNMSSVPDNAPQHCPGTQSEDAGKASACAGCP 224
            +I  + + PD  P+    T  ED+ +   CAGCP
Sbjct: 1213 IIGRVEADPDYLPRKKDFTVDEDSFRMKFCAGCP 1246


>SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05)
          Length = 416

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 483 LWTCSPRTPSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPP 334
           L    P+TP  +   G  +    IP+  SG +   P P I+V +L P+ P
Sbjct: 41  LTNAPPQTPPAKLIKGLPLPPRIIPSNTSGRVLDEPVPEINVPILKPSQP 90


>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
          Length = 1970

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 483 LWTCSPRTPSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPP 334
           L    P+TP  +   G  +    IP+  SG +   P P I+V +L P+ P
Sbjct: 172 LTNAPPQTPPAKLIKGLPLPPRIIPSNTSGRVLDEPVPEINVPILKPSQP 221


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 308 HKILILSGKGGVGKSTVTSIIGHGLASMSPDR 403
           H+++++SG+ G GK+  T  +   LA+ +P +
Sbjct: 63  HQVIVISGESGAGKTESTKQLVQYLATANPTK 94


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 147 PDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEA 254
           P   PQ+CP  +   A KA AC  C       +GEA
Sbjct: 312 PSQLPQNCPAGEEVAASKA-ACQPCAAGEYSNTGEA 346



 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 168 CPGTQSEDAGKASACAGCPNQNICASGEAL 257
           C   Q    G  S C  CP+  +CA    L
Sbjct: 286 CTAGQYSTVGSPSGCQTCPSNKVCADPSQL 315


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 305 KHKILILSGKGGVGKSTVTSIIGHGLAS 388
           K K +++ GK GVGKST+ S + +  A+
Sbjct: 162 KTKRILIEGKAGVGKSTLVSEMAYDWAT 189


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 450 RGWLGPQMSASSIPTFLSGLIDARPCPIIDV 358
           RG++GP+++AS    FL     +  C I+DV
Sbjct: 43  RGYIGPEVAASITAKFLKSQGFSEDCRILDV 73


>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
          Length = 458

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 317 LILSGKGGVGKSTVTSIIGHGL 382
           L LSG  GVGKS+VT+++   L
Sbjct: 317 LFLSGGAGVGKSSVTNVLYEAL 338


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +1

Query: 205 QPVLDALIKTFAHLEKHST*PRSRTDKTTSLQCKAQNSDLVR*RGGRKKYCDINNWARSC 384
           +PV   + +T +  + H T   SRT   T  Q K +  D+V+   G +K  +   W R C
Sbjct: 89  KPVTHKVWRTLSPNKSHRTELVSRTPTPT--QQKYKKGDIVQMPNGIRKKFNGKQWRRLC 146

Query: 385 INES**KRRYTR--C-RHL 432
             E   K    R  C RHL
Sbjct: 147 SREGCNKESQRRGFCSRHL 165


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 272 VELIKQRLSNVKHKILILSGKGGVGKSTVTSII 370
           +EL+     N  H + +++ K G+GK+ V+ I+
Sbjct: 15  IELLNYAKDNHMHGVRVIAAKYGIGKTQVSKIL 47


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 153 NAPQHCPGTQSEDAGKASACAGCPNQNICASGEALNLTP 269
           N+ Q C  T  E    AS C  C +  + ++   +NL P
Sbjct: 716 NSCQQCGQTCQECTKTASHCITCGDNRVLSNNSCINLCP 754


>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
          Length = 306

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 492 EPELWTCSPRTPSTRGWLGPQM 427
           E EL    PR  + RGW GPQ+
Sbjct: 4   ESELALYDPRAENGRGWCGPQV 25


>SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 493

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 483 LWTCSPRTPSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPP 334
           L    P+TPS     G  +    IP+  S  +   P P I+V +L P+ P
Sbjct: 41  LTNAPPQTPSAELLKGLPLPPRIIPSNTSERVLDEPVPEINVPILKPSQP 90


>SB_22786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 307 LYIGETLFYQFYCGVRLS 254
           ++ G+TL+ Q YCG++LS
Sbjct: 101 VFAGQTLYSQAYCGLKLS 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,937
Number of Sequences: 59808
Number of extensions: 335296
Number of successful extensions: 917
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)