Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00222X
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...   102   2e-22
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    30   0.79 
U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    28   3.2  
AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.      28   4.2  
AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective mei...    28   4.2  
Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical pr...    25   8.5  

>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/76 (64%), Positives = 57/76 (75%)
 Frame = +2

Query: 260 PDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDRNVGILDADICGP 439
           PD  V  I+ R S +KHKILILSGKGGVGKST+TS +   LAS  P + V ILD DICGP
Sbjct: 43  PDADVPKIQDRFSRIKHKILILSGKGGVGKSTLTSNLARALAS-DPSKQVAILDVDICGP 101

Query: 440 SQPRVLGVRGEQVHNS 487
           SQPR++GV  E+VHNS
Sbjct: 102 SQPRMMGVEDEEVHNS 117



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +3

Query: 135 MSSVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGE 251
           MS VPD+A   CPGT S  AGKAS CAGCPNQ  CA+G+
Sbjct: 1   MSDVPDDANAGCPGTGSAGAGKASGCAGCPNQGSCATGQ 39


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 459 PSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPP 334
           P+T G  G + + S+ PT   GL  +   P    T  F  PP
Sbjct: 126 PATGGLFGAKSTTSAAPTLGGGLFGSSTAPAAAATTSFGAPP 167


>U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical
           protein F20D6.8 protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 248 RSTQPDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGHGLASMSPDR 403
           R+T PD  + L   +   +KH +L + G    GK ++ + I H   SM+P+R
Sbjct: 153 RATCPD--IFLFDSQNCLMKHVVLRIYGARNCGKKSLANRIHHFATSMAPER 202


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 459 PSTRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPPLP 328
           P  +G++GP   A   PTF   +    P P++  T   P P LP
Sbjct: 740 PPPQGYVGPLPPAPPPPTFR--VAPQVPLPVVQTTQTAPKPTLP 781


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
            protein F54G2.1a protein.
          Length = 1126

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -1

Query: 435  PQMSASSIPTFLSGLIDARPCPIIDVTVLFPTPPLPDKIRILCFTLERRCFISSTAGSG* 256
            P+    ++P   + ++     PI D T  F  PP P    +L FT+    ++ S   +G 
Sbjct: 1007 PKFRYPAVPVVKTKVVSKSLNPIFDETFEFHIPPNPPSTAMLHFTVMDHDYLRSNDFAGE 1066

Query: 255  VLLQM 241
              L++
Sbjct: 1067 AFLEL 1071


>Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical
           protein T20D3.5b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 405 FLSGLIDARPCPIIDVTVLFPTPPLPDKIRILCFTLER 292
           FLSG+ +A  CP+  V VL  T    DK +    T  R
Sbjct: 131 FLSGVCEAMLCPLERVQVLLQTTIFHDKFKNTLHTFNR 168


>Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical
           protein T20D3.5a protein.
          Length = 221

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 405 FLSGLIDARPCPIIDVTVLFPTPPLPDKIRILCFTLER 292
           FLSG+ +A  CP+  V VL  T    DK +    T  R
Sbjct: 40  FLSGVCEAMLCPLERVQVLLQTTIFHDKFKNTLHTFNR 77


>Z68879-1|CAA93081.1|  850|Caenorhabditis elegans Hypothetical
           protein K08F4.1 protein.
          Length = 850

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 311 KILILSGKGGVGKSTVTSIIGHGLASMSPDRN 406
           K+L+LSG  G+GKST+  I+       + D N
Sbjct: 331 KMLLLSGPAGLGKSTLARIVARQAGYSTIDVN 362


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 489 PELWTCSPRTPS---TRGWLGPQMSASSIPTFLSGLIDARPCPIIDVTV 352
           PEL T  P   +   T   LG ++++  +   L G++DA  C ++ VTV
Sbjct: 132 PELETLVPNALTYLATVQLLGNEINSKVVKEQLGGILDASTCMVVSVTV 180


>AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 138 SSVPDNAPQHCPGTQSEDAGKASACAGCPNQ-NICASGEALNL 263
           SS+P ++P+      S +A   SAC    N+  +CA  E+ NL
Sbjct: 93  SSLPKSSPESSVSVMSSNASLWSACTEEVNKIGVCAKRESRNL 135


>AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective
           meiosis protein 2 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 138 SSVPDNAPQHCPGTQSEDAGKASACAGCPNQ-NICASGEALNL 263
           SS+P ++P+      S +A   SAC    N+  +CA  E+ NL
Sbjct: 93  SSLPKSSPESSVSVMSSNASLWSACTEEVNKIGVCAKRESRNL 135


>Z81111-7|CAB03270.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 480 WTCSPRTPSTRGWLGPQMSAS 418
           W C P  P T G++GP +  S
Sbjct: 153 WFCFPMNPVTSGYIGPDLYES 173


>Z81099-5|CAB03190.1|  342|Caenorhabditis elegans Hypothetical
           protein T01G5.5 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 480 WTCSPRTPSTRGWLGPQMSAS 418
           W C P  P T G++GP +  S
Sbjct: 153 WFCFPMNPVTSGYIGPDLYES 173


>U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical
           protein F13B9.6 protein.
          Length = 390

 Score = 24.6 bits (51), Expect(2) = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 386 SMSPDRNVGILDADICGPSQPRVLGV 463
           S SPD ++ I+D++ CG    R + V
Sbjct: 205 SNSPDASINIIDSNGCGVRLSRAIDV 230



 Score = 20.6 bits (41), Expect(2) = 8.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 ILSGKGGVGKSTVTSIIGHGLA 385
           +++G GG    T+  + GHG++
Sbjct: 146 VVTGSGGSPALTMQILEGHGIS 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,396
Number of Sequences: 27780
Number of extensions: 250218
Number of successful extensions: 671
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)