Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00222X
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.44 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 215 WMP*SKH-LRIWRSTQPDPAVELIKQRLSNVKHKIL 319
           WMP  +  ++ W   QP+P +ELI+  +  + + IL
Sbjct: 476 WMPSIRGAIQQWTCRQPEPLIELIEHWMPLLPNWIL 511


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 290 VVLSVLLRGQVECF 249
           V+++VLL GQV CF
Sbjct: 13  VIINVLLHGQVICF 26


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 310 VLYIGETLFYQFYCGVRLSAS 248
           VL I + L    YCG+R   S
Sbjct: 675 VLLISDRLSRDLYCGIRAGLS 695


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 310 VLYIGETLFYQFYCGVRLSAS 248
           VL I + L    YCG+R   S
Sbjct: 713 VLLISDRLSRDLYCGIRAGLS 733


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 464 GRPVLAAGSGRR 429
           G PV+ AG GRR
Sbjct: 578 GVPVVGAGGGRR 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,509
Number of Sequences: 438
Number of extensions: 3274
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)