Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00221
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    31   0.18 
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    31   0.18 
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    26   5.1  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   6.8  

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 550 ALLVAVTHD*SAVSISRRAFSYHRQNRPNGDWRH 449
           A ++ +++D S++  S+R F  H      GDWRH
Sbjct: 256 AQVLRISNDFSSIDASKRIFKEHESMCYGGDWRH 289


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +1

Query: 547 KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLN 726
           KH N   S  QK  EW R   N  +++ IN+   D +   Q   HD  +  +   M TL 
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTK---QPKMHDFRQPLHPNPMTTLK 765

Query: 727 FEDAQNSVNF 756
            +   NS ++
Sbjct: 766 RKGQHNSFSY 775


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +1

Query: 517 QINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKT 696
           ++ H  + Q       R++F K   WL    NT+  +K +   + K      +  ++ KT
Sbjct: 78  KLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKES---LQKDEAEYVELANSLKT 134

Query: 697 YYETDM 714
             ET++
Sbjct: 135 KVETNI 140


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 744 VLCIFEVKCYHISFVIGLCIVMKVLLW 664
           ++C+ E   Y IS V+ LC+ M    W
Sbjct: 130 LICLVETTVYQISVVLLLCLTMGWKSW 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,014
Number of Sequences: 5004
Number of extensions: 63660
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)