Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00221
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361...    33   0.19 
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    30   1.8  
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    29   4.1  

>07_01_0480 +
           3616123-3617506,3618033-3618166,3618578-3618818,
           3618912-3619120,3619234-3619265,3619363-3619474,
           3619609-3619890
          Length = 797

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 290 LKFLVLAIVPLSFAQNIPKATN--LHNGLTEKIGNFSIELLYHTSNLEQSKGN 442
           ++FL   I+P  FA N+ K TN  L   L  KIG+++I +L  T   E   GN
Sbjct: 610 IQFLHGGIIPGLFANNL-KITNILLDQNLVAKIGSYNIPILSETMKSEGGSGN 661


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
 Frame = +2

Query: 233 GIYETCFNEVK*TKLIMCLLKFLVLAIVPLSFAQNIPKATNLHNGLTEKIGNFSIELLYH 412
           G   +C  +++  K +     FL+  I P +   N+ K   +H G+    G F +  L +
Sbjct: 99  GTINSCLGKLQQLKYLNMERNFLMGEIAP-NLLINLTKLETIHLGVNNLTGTFMLSWLAN 157

Query: 413 TSNLE----QSKGNL-IMSPITVWTVLAVIAEGASGNRDGRSI 526
           +SNL         NL I + +  WT L  +    S N+   SI
Sbjct: 158 SSNLVDVVLSHNYNLKIETELVRWTPLFQLVLDLSENKISMSI 200


>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 GDS*RRVWKSRRQINHALRLQAKHTNVTR 567
           G   RR W+SR +   A+R Q +HT V R
Sbjct: 88  GGGVRRPWRSREEAGAAIRSQWRHTAVRR 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,584
Number of Sequences: 37544
Number of extensions: 368993
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)