Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00221
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       29   3.1  
SB_58557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   29   4.1  
SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)        29   4.1  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   5.4  

>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 600 SQHEHNRTRQNQCHYCR*ATFATTRLS*QCK 692
           S+H HNR R+  C   R   F  TR    CK
Sbjct: 330 SEHNHNRKRKKNCQARRVYRFVPTRKKKHCK 360


>SB_58557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 607 C*LGAILRFFGIRFE*RSYALLVAVTHD*SAVSISRRAFSYHRQNRPN 464
           C +  ++ +  I+   RSYAL   +THD   ++ +   F+   +N+ N
Sbjct: 110 CGVAVVVEYLPIKLVERSYALATVMTHDVDVLNFTAFVFTIKCKNKFN 157


>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 442 LDYVSNHRLDGFGGDS*RRVWKSRRQINHALRL-QAKHTNVTRSEFQKISE 591
           LDY+S H L   GGDS  ++ K     +HA+ L + +   +     QK++E
Sbjct: 823 LDYLSRHPLPETGGDSTEKIIKWTVDADHAVVLKRIREETLKDKTSQKLAE 873


>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
          Length = 488

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 559 RSYALLVAVTHD*SAVSISRRAFSYHRQNR-PNGDWRHNQVTFTLLQIRGV 410
           RSY  +V V    S  ++ R A + HRQNR P   W+H +   TL++  G+
Sbjct: 181 RSYPAVVVVPQSISDDTVLRVAKN-HRQNRFPVAIWKHPKNKATLVRAGGI 230


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 517  QINHALRLQAKHTNVTRS-EFQKISEWLRVNTNTIEL-AKI 633
            QINH  +  A+HT+VTRS + + + E LR+    +   AKI
Sbjct: 1388 QINHPFQRAAQHTDVTRSHDPEVVKEVLRLQERILRFQAKI 1428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,770
Number of Sequences: 59808
Number of extensions: 447895
Number of successful extensions: 1142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)