Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00221
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 692 FALS*KSCCGKRCLSTIMALILASSIVFVL 603
           F +S   CCG    S  M +  AS ++F+L
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFIL 92


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 467 WTVLAVIAEGASGNRDGRS 523
           WT++A IA  ASG  +G S
Sbjct: 4   WTLMAAIALAASGLVNGGS 22


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 360 WRLVALGIF*AKD 322
           WRLVA GI  AKD
Sbjct: 22  WRLVADGILNAKD 34


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 1   VSKIFTYFSHF 33
           V K+ TYF HF
Sbjct: 455 VDKLITYFDHF 465


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 1   VSKIFTYFSHF 33
           V K+ TYF HF
Sbjct: 455 VDKLITYFDHF 465


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 1   VSKIFTYFSHF 33
           V K+ TYF HF
Sbjct: 81  VDKLITYFDHF 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,518
Number of Sequences: 438
Number of extensions: 4374
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)