Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00219
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   105   9e-24
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   105   9e-24
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.2  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   3.8  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   8.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  105 bits (251), Expect = 9e-24
 Identities = 49/80 (61%), Positives = 55/80 (68%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRKLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KG TYGKP   GVN LK  R  +  AEE            +SYWV QD++YK+FEVI
Sbjct: 74  PVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

Query: 435 LVDPSHKAIRRDPKINWIVN 494
           LVDPSHKAIRRDP+INWIVN
Sbjct: 134 LVDPSHKAIRRDPRINWIVN 153



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +2

Query: 509 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 646
           RE RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 159 RESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  105 bits (251), Expect = 9e-24
 Identities = 49/80 (61%), Positives = 55/80 (68%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRKLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KG TYGKP   GVN LK  R  +  AEE            +SYWV QD++YK+FEVI
Sbjct: 74  PVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

Query: 435 LVDPSHKAIRRDPKINWIVN 494
           LVDPSHKAIRRDP+INWIVN
Sbjct: 134 LVDPSHKAIRRDPRINWIVN 153



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +2

Query: 509 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 646
           RE RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 159 RESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 397 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYIS 507
           L+KIL  S  ++ ++T H  P V ++ S     LYIS
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYIS 83


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 506 AREMRG-LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 622
           A + RG ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/86 (17%), Positives = 34/86 (39%)
 Frame = -1

Query: 515 SHVLMYSIHDPVDLRIATNGLV*RVHEDNLEILV*RILCNPVRAQHXXXXXXXXXTFLSN 336
           +HV+ Y +    D+ +  +G   R +ED + IL    +C P                +  
Sbjct: 459 THVIHYHVPHTADMYVHRSGRTARANEDGVSIL----MCGPKELSQLKRLCYRLKKKIET 514

Query: 335 GLKFARGLQLVDTMALGLAISGTLSN 258
            + F   + ++D +   + ++  + N
Sbjct: 515 FINFPVDMSILDILKTRVVLAHKIVN 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,169
Number of Sequences: 5004
Number of extensions: 59338
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)