Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00219
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   4e-24
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 31   1.0  
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)                  30   2.3  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.1  
SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   7.1  
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)                       28   7.1  
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)                 28   7.1  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  108 bits (260), Expect = 4e-24
 Identities = 46/59 (77%), Positives = 55/59 (93%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 213
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGF 59



 Score =  105 bits (253), Expect = 3e-23
 Identities = 49/78 (62%), Positives = 56/78 (71%)
 Frame = +3

Query: 255 PVAKGATYGKPKSHGVNQLKPTRKLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVI 434
           PV KGATYGKP + GVN+LK  R L+S+AEE            +SYWV QDS YKYFEVI
Sbjct: 74  PVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVI 133

Query: 435 LVDPSHKAIRRDPKINWI 488
           +VDP HKAIRRD +INWI
Sbjct: 134 MVDPFHKAIRRDARINWI 151



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +2

Query: 509 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 646
           RE+RGLT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 159 RELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 126 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQAPVAKGATYGKPKSH 296
           P  D+      AH+    P T ++PC    C  QNPC+   P     + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +3

Query: 84  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 248
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 249 QAPVAKGATYGKPKSHGVNQ 308
                + +T G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
          Length = 498

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = -2

Query: 721 LSHWLSICIQ-K*ANGKSLTVLD----RCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLA 557
           L+ W+ + +Q    N  S TV+     R  +FAT + +V      P  A   + +S+ + 
Sbjct: 248 LTEWIVLYVQLSTGNYGSFTVVQLPNVRNATFATEIDNV------PNGAQETIAISLPID 301

Query: 556 ETSGAATSRSQTTHLTCLCTAFTIQLILGS 467
            T+G   SR  T  + C C    + L +G+
Sbjct: 302 NTTGLTASRGYTIRIECYCIDPNVMLTMGT 331


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 207
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 197 VLNKVMLYSESVCDVVAASASC*GCHLWQAQEPWCQPVEAHAQTS 331
           V+N  +L    V + V     C  CH   AQ+ W   V+   +TS
Sbjct: 121 VMNSTILQQVFVVEYVVQGQMCDACHRQAAQDFWKAVVQVRQKTS 165


>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 601 PA*ASLCLRVSMSLAETSGAATSRSQTTHLTCLCTAFTIQLILGS 467
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 190 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIEPNVMLTMGT 234


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 601 PA*ASLCLRVSMSLAETSGAATSRSQTTHLTCLCTAFTIQLILGS 467
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 302 PNGAQETIAISIPIDNTTGLTASRGYTIRIECYCIDTNVMLTMGT 346


>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 417 CMKNLVQPSKSSTHGDHRND---GQHVPQQWIEVCAWASTG*HHGSWA 283
           C +  + PS++   GDH +D   G       ++VCAW+S   H  +W+
Sbjct: 379 CRQWGIPPSQAIMVGDHLHDIQSGNTAGAVHLQVCAWSSHVLHLFAWS 426


>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 580 LRVSMSLAETSGAATSRSQTTHLTCLCTAFTIQLILGS 467
           + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 71  IAISLPIDNTTGLTASRGYTVRIGCYCIDSNVMLTMGT 108


>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
          Length = 536

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 580 LRVSMSLAETSGAATSRSQTTHLTCLCTAFTIQLILGS 467
           + +S+ +  T+G   SR  TT + C C      L +G+
Sbjct: 364 IAISLPIDNTTGLTASRGYTTRIECYCIDPNAMLTMGT 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,919,834
Number of Sequences: 59808
Number of extensions: 504514
Number of successful extensions: 1143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)