Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00218
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   4.3  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   5.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   5.7  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   7.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   9.9  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 607 DNLVIVLLVFSMDLGMTSNWNYFHYSSSAISSTQRNT 497
           D + + +L     L    +WN+F+Y++SAI S  + T
Sbjct: 475 DGVSMTILTICKILLNNFDWNFFNYNNSAIDSYAKCT 511


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 360 YFESCCYSSRLRVTSMHQTDAILFDECYPDALLKNCHKIGEGVY 491
           Y ++  Y    +V   H+ D  +  +  PD  LKN     +G+Y
Sbjct: 682 YIKALKYGDAFKVCRTHRLDLNILFDYDPDLFLKNIPVFVDGLY 725


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 414 TDAILFDECYPDALLKNCHKIGEGVYGEV 500
           T  + F+E Y +A +   HK GE +Y  V
Sbjct: 41  TSQLSFEELYRNAYILVLHKYGEKLYNHV 69


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 LFDECYPDALLKNCHKIGEGVYGEVFLCV 512
           ++   YP    +   +IGEG YG+V+  +
Sbjct: 267 IYTYTYPKPAYEKIDQIGEGTYGKVYKAI 295


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 512 HAKKYFPVHTFANLVTVFQKCVW 444
           H+KK F V T + ++T+F K  W
Sbjct: 202 HSKKKFAVGTASGVITLFTKGDW 224


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 325 HHRARVLITRQSYHHNRRSKTLCMQGKMHA 236
           H  AR  +   S+H +R+ +   ++G +HA
Sbjct: 11  HFHARSSVNDSSFHLSRQEEAELLEGALHA 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,481
Number of Sequences: 5004
Number of extensions: 56424
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)