Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00218
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516...    38   0.006
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253...    28   5.9  
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661...    28   5.9  
12_02_0354 + 17881987-17881992,17882066-17882092,17882318-178823...    28   7.8  
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959...    28   7.8  

>07_03_1421 -
           26451012-26451155,26451256-26451322,26451605-26451657,
           26451736-26451806,26453340-26453482,26453858-26453919,
           26454008-26454100,26454203-26454314,26454432-26454547,
           26454625-26454787,26454829-26455349,26455429-26455528,
           26457472-26457552,26457666-26457877
          Length = 645

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 533 VMKIVPIAGHTKVHGEDQKDYHEIISEIVIAMELSALRAPIAD 661
           V K+VP  G + V+GE QK   E++ E+++ + L+ LRA   D
Sbjct: 341 VCKVVPFDGTSLVNGETQKKAEEVLEEVLLCLTLNNLRADRGD 383


>06_03_0540 -
           21923763-21923945,21924027-21924776,21924895-21925323,
           21925509-21925619,21925715-21926040,21926130-21926251,
           21926905-21927020,21927119-21927243,21927338-21927596
          Length = 806

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 471 KIGEGVYGEVFLCVLEMAEL 530
           KIGEG YG V+ C L+  E+
Sbjct: 458 KIGEGGYGNVYRCTLDHTEV 477


>02_02_0082 +
           6615408-6615606,6615736-6615866,6615957-6616072,
           6617109-6617230,6617353-6617645,6617774-6617875,
           6620437-6620865,6621026-6621775,6621915-6622109
          Length = 778

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 471 KIGEGVYGEVFLCVLEMAEL 530
           KIGEG YG V+ C L+  E+
Sbjct: 426 KIGEGGYGNVYRCTLDHTEV 445


>12_02_0354 +
           17881987-17881992,17882066-17882092,17882318-17882392,
           17882490-17882606,17882789-17882875,17882919-17883119
          Length = 170

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 563 TKVHGEDQKDYHEIISEIVIAM 628
           +KV G DQ  YHE+   +VIAM
Sbjct: 48  SKVKGVDQWSYHEVEIHVVIAM 69


>11_08_0008 +
           27591454-27592154,27595078-27595253,27595774-27595968,
           27598124-27599184
          Length = 710

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 426 LFDECYPDALLKN-CHKIGEGVYGEVFL 506
           +F E   D++ K  C KIG+G +GEV++
Sbjct: 397 IFTEKELDSITKGKCTKIGQGAFGEVYM 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,914
Number of Sequences: 37544
Number of extensions: 335221
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)