Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00218
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52959| Best HMM Match : ProQ (HMM E-Value=6.7) 30 1.5
SB_43032| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05) 29 2.6
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 29 2.6
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_51685| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.0
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4) 28 7.9
SB_25465| Best HMM Match : SHD1 (HMM E-Value=4) 28 7.9
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) 28 7.9
SB_8207| Best HMM Match : SHD1 (HMM E-Value=4) 28 7.9
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28) 28 7.9
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1) 28 7.9
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8) 28 7.9
>SB_52959| Best HMM Match : ProQ (HMM E-Value=6.7)
Length = 228
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 128 HNTHNNSCFFNVYY*S*NTSEYHNTVTKL-KIK*KLFSRTKT 6
H THN + YY + + + YH+ VTK+ K+ ++F R +T
Sbjct: 15 HLTHNGKSQYARYYVNHDETFYHDNVTKVAKVSRQIFYRPRT 56
>SB_43032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 482 RCVRGSISLRARDGRARVMKIVPIAGHTKVHGEDQKDYHE-IISEIVIAMELSAL 643
R + GS+SLR A + + +A H +G D + HE +S+ +I EL L
Sbjct: 27 RTLCGSLSLRCGRLMALAVVALHVARHVNTNGTDTRCQHETAMSDYIITNELRTL 81
>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
Length = 698
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 556 WSYQGPWRRPKGLSRDYLGNCDCYGIERPARSHSRYRT 669
W +G R GL R ++ C CYG++R ++ R T
Sbjct: 93 WVTEGLSYRGFGLPRVWVTECSCYGLQRYSKRFGRADT 130
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 552 IGTIFITRALPSRARKEILPRTHLRQSCDSFSKVRLDSIHQIV*HPFDAST*HVISSCSN 373
+G + + R P + ++LP Q K +L S + HP ST ++ CSN
Sbjct: 77 VGDLNLNRLRPDKPEGKLLPDLETEQDGIGGDKAKLSSPDDFMDHP---STIRILEVCSN 133
Query: 372 T 370
T
Sbjct: 134 T 134
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 562 YQGPWRRPKGLSRDYLGNCDCYGI 633
Y+G W P ++R Y G CYG+
Sbjct: 38 YEGKWHPPGEIARGYDGRNWCYGV 61
>SB_51685| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 380
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 426 LFDECYPDALLKNCHKIGEGVYGEVF 503
+F C P A + ++IGEG YG V+
Sbjct: 26 MFGSCRPVAEFEKLNRIGEGTYGIVY 51
>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 375 CYSSRLRVTSMHQTDAILFDECY-PDALLKNCH 470
C+++ VT+ H TD + + C+ D + NCH
Sbjct: 305 CHTTDCHVTNCHNTDCHVTNSCHTTDCHVTNCH 337
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 375 CYSSRLRVTSMHQTDAILFDECY-PDALLKNCH 470
C+++ VT+ H TD + + C+ D + NCH
Sbjct: 284 CHNTDCHVTNCHTTDCHVTNSCHTTDCHVTNCH 316
>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 211
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 104 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 140
>SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 147
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 40 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 76
>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
Length = 537
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 274 DDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLRRCIKRMLYYLMNAIQTH 453
D I L +S +E + L +HD R+ T + KR YY+ + +TH
Sbjct: 420 DPVQKLITVLKDISETSIEAKELALELHDVELRMTTCETALREEKDKRKKYYVDHCRRTH 479
>SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)
Length = 208
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 25 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 61
>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
Length = 478
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 104 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 140
>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 183 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 219
>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 393 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 429
>SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)
Length = 112
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 25 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 61
>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 368 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 404
>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
Length = 310
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 262 GFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNR 372
G++ D +T + L K+ +D+E ++ + IH+ S R
Sbjct: 183 GYIWLDAPNTSINLIKMRFEDIERQVWLSEIHNDSRR 219
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,702,378
Number of Sequences: 59808
Number of extensions: 432075
Number of successful extensions: 1113
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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