Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00218
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    33   0.24 
U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna syn...    31   0.75 
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    31   0.75 
U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical pr...    28   6.9  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.9  

>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 494 GSISLRARDGRARVMKIVPIAGHTKVHGEDQKDY---HEIISEIVIAMELSALRAP 652
           G +     +GR   +K++P   +   +G    +    H ++SE+++  ELSALR P
Sbjct: 117 GEVFSTVWNGRPVAIKVLPFENNGCFYGNQSVEIPTTHAVLSEVIVMKELSALRDP 172


>U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna
           synthetase protein 2 protein.
          Length = 968

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 253 AYTGFLSDDCDDTIVGLSKLSLDDVEPEITVLGIHDTSNRVATARDYVLRRCIKRMLYY 429
           AYTGF+ D+  D +    ++  D V      + + D      + R YVLRR ++R + Y
Sbjct: 278 AYTGFIGDEDKDGVDMAYRVVADHV--RTLTIALSDGGRPDNSGRGYVLRRILRRGVRY 334


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
 Frame = +1

Query: 217 KSVQSQVHASYPAYTGFL----SDDCDDTIVGLSKLSLDDVEP 333
           K V+S++H+S+P+Y GF+    S+  +D+++ L ++  + +EP
Sbjct: 501 KKVRSKLHSSFPSYNGFVNSVASEMLNDSVI-LVEIDKEKIEP 542


>U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical
           protein C16C8.2 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 270 QKPCVCRVRCMHLALDTFNGTKNRQKKPIIPLRIMAVTQI 151
           + P   R  C HL   +F+GT N  KKP+I     A+ ++
Sbjct: 190 ETPNCNRNLCYHLRYRSFDGTCNNLKKPMIGSAFTALMRL 229


>Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical
           protein F54B3.2 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 280 CDDTIVGLSKLSLDDVEPEITVLGIHDTSN-RVATARDYV 396
           C D  +GLS LS     PEI VL  H++++ R+ +A D V
Sbjct: 49  CHDVPLGLSNLSTITNIPEIVVLREHNSNDIRMTSALDDV 88


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 317 SMMWNRRSPF*V-YMILRIVLLQLEITCYV 403
           S +W +R  F + Y++L IVL+ LEI C V
Sbjct: 91  SSVWPKRKGFMITYLVLIIVLVSLEIGCGV 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,267,473
Number of Sequences: 27780
Number of extensions: 318493
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)