Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00218
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.87 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.87 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 292 IVGLSKLSLDDVEPEITVLGIHDTSNRVAT 381
           I  L  +SL+ ++PE+T    H   NR+ T
Sbjct: 185 ISSLENISLNGIDPELTESEQHRLQNRLYT 214



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 471 KIGEGVYGEVFLC 509
           +IG G YG VF C
Sbjct: 599 EIGRGQYGIVFAC 611


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 292 IVGLSKLSLDDVEPEITVLGIHDTSNRVAT 381
           I  L  +SL+ ++PE+T    H   NR+ T
Sbjct: 223 ISSLENISLNGIDPELTESEQHRLQNRLYT 252



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 471 KIGEGVYGEVFLC 509
           +IG G YG VF C
Sbjct: 637 EIGRGQYGIVFAC 649


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 202  PSKKTYYPVTDNGSHSNFVF 143
            P+K TY+  TD   H  + F
Sbjct: 1268 PAKNTYFEATDLQQHVEYQF 1287


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 202  PSKKTYYPVTDNGSHSNFVF 143
            P+K TY+  TD   H  + F
Sbjct: 1264 PAKNTYFEATDLQQHVEYQF 1283


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 219 KCPKPSACILPCIHRVFER 275
           +C K   C + CI+RV +R
Sbjct: 473 ECNKRCNCDIDCINRVVQR 491


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 IKRMLYYLMNAIQTHF*KTVTRLAKVCTGKYFF 507
           I+ +L  +M A+ T+  +    L K  TG+Y F
Sbjct: 16  IQIVLIIVMGALMTYGPEANVNLLKNRTGRYMF 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,608
Number of Sequences: 438
Number of extensions: 4283
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)