Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   0.88 
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   4.7  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   8.2  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   8.2  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 162 HDWDQKPSHAKNGSAYDVDY*GSEK 88
           HD  ++PSH K+ SA  +D   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 87  IFHCPNSQHRRRSRSLHGRVFD 152
           +FHC +S HR    +LH R  D
Sbjct: 477 VFHCEHSAHRAPHLALHFRNTD 498


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 359 KTF*IQNAVTSSSYLFL 309
           KTF ++N  TS  YLFL
Sbjct: 289 KTFPLRNKTTSDDYLFL 305


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 101 RAVKNPMILKSQ*LLT 54
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,108
Number of Sequences: 5004
Number of extensions: 36423
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)