Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448     29   1.5  
10_07_0162 - 13713504-13714754,13716445-13716522                       28   3.5  
04_04_0500 - 25677767-25680850                                         28   3.5  
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767           27   4.6  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    27   4.6  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    27   6.0  
04_03_0314 - 14238620-14240128                                         27   6.0  
11_01_0583 + 4636832-4637521                                           27   8.0  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    27   8.0  

>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
          Length = 333

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = -1

Query: 216 SCNAPRHYSRCAEA-EQRCHDWDQKPSHAKNGSAYDVDY*GSEKSHDP 76
           S N PR Y RC    +Q C    Q  +   N S + + Y G     DP
Sbjct: 138 SPNNPRSYYRCTHRPDQGCMATKQVQTSESNSSEFVISYYGEHTCSDP 185


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 141 RVFDPNRGTSARLQRIGNNGGEHCSFSPVVLREFNGRKII 260
           RV+DPN GT A+     ++ G   +F    L   NG+  I
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCI 378


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 99  PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 197
           P ++H +  R+LHGR+    RG S  L R+G++
Sbjct: 67  PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96


>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
          Length = 355

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 307 QTYGVGAIMAAAVNFDIIFRP 245
           Q  GVGA++ AAV F + F P
Sbjct: 134 QMLGVGAVLVAAVTFAVAFSP 154


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  KDYQVLICIVYLVRSYCDLRIMGFFTALIVNIV 117
           KD +++IC +Y V S C   IM   +  IV IV
Sbjct: 139 KDIEIVICFIYAVDSVCSRLIMLQSSLDIVMIV 171


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 354  ILNPECSDEQQLSVFDKLMELVLSWRRQ 271
            ++NPEC D ++  ++  L EL  S+R +
Sbjct: 932  LINPECGDNRETWIWSPLHELRESYRHE 959


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 221 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 84
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 296 SWCYHGGGSQL*YNLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 117
           S C  G  S+    L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 170 SGCLDGSSSEGEVLL-ATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227


>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
            9652201-9652287,9652657-9653669,9653832-9654854,
            9654946-9654969
          Length = 1029

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 93   HCPNSQHRRRSRSLHGRVFDPNRGTSARLQRIG-NNGG-EHCSFSP 224
            + P+  H RR  S   R+   +RG    ++R G ++GG E  SF P
Sbjct: 877  YLPHRHHTRRHGSPFDRIEHDDRGMQRNMRRCGMHHGGVEGDSFEP 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,056
Number of Sequences: 37544
Number of extensions: 262613
Number of successful extensions: 615
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)