Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              27   4.7  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    27   4.7  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   8.2  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 191 PDALKPSRGATIGIKN-PPMQRTAPPTMLTIRAVKNP 84
           P  +KP + +  G+K+ PP++++ PP    +   K P
Sbjct: 186 PSIIKPVKTSWFGVKSGPPLRQSTPPFYTKLFGTKPP 222


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 215 AAMLPAIIPD-ALKPSRGATIGIKNPPMQRTAPPT 114
           +A++  I+ D A  P R ++ G + PP++RT  PT
Sbjct: 93  SALVNIIMQDGAAPPPRPSSAGAELPPLERTGSPT 127


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 198 HYSRCAEAEQRCHDWDQKPSHAKNGSA 118
           H S+ AEAE+ C D   KP+ A+   A
Sbjct: 587 HVSKPAEAEKSCADHLSKPAEAEKSRA 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,995
Number of Sequences: 59808
Number of extensions: 279054
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)