Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   0.83 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   3.4  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   5.9  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.4 bits (53), Expect = 0.83
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 176 PSRGATI-GIKNPPMQRTAPPTMLTIRAVKNPMILK 72
           PSR A   GI +PP     PP+ L+   V  P +L+
Sbjct: 771 PSRSAFADGIGSPPPPPPPPPSSLSPGGVPRPTVLQ 806


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +3

Query: 78   DHGIFHCPNSQHRRR--SRSLHGRV 146
            +H +FHCP S   R    +  H RV
Sbjct: 949  EHVLFHCPRSDRIRNEMQQRCHSRV 973


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 304 TYGVGAIMAAAVNFDIIFRPLNSRNTT 224
           TYG+      A   D+ + PL+S+N T
Sbjct: 131 TYGMRFTTTLACMMDLHYYPLDSQNCT 157


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,340
Number of Sequences: 2352
Number of extensions: 10274
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34205040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)