Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    29   1.8  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    27   7.2  

>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 34  LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 132
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 34  LICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 132
           L+C+VY+ RS     + G+   L++ ++GG  L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 347 IQNAVTSSSYLFLTNLWSWC 288
           I+N  TS +++F T LW+ C
Sbjct: 255 IENKATSFAFIFATTLWTSC 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,041,329
Number of Sequences: 27780
Number of extensions: 205779
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)