Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00217X
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 304 TYGVGAIMAAAVNFDIIFRPLNSRNTT 224
           TYG+      A   D+ + PL+S+N T
Sbjct: 150 TYGMRFTTTLACMMDLHYYPLDSQNCT 176


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 231 LREFNGRKIISKLTAAAMIAPTP*VCQKQITAARHCILD 347
           + EF     I +     MI     + ++ +  A HCI+D
Sbjct: 169 INEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIID 207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 293 WCYHGGGSQ 267
           WCY+GG ++
Sbjct: 954 WCYYGGDAR 962


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,107
Number of Sequences: 438
Number of extensions: 3006
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)