Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00217X
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76360.1 68414.m08872 protein kinase, putative similar to pro... 28 2.9
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ... 27 3.8
At3g43583.1 68416.m04636 hypothetical protein 27 3.8
At5g50350.1 68418.m06236 expressed protein 27 5.1
At5g38630.1 68418.m04672 cytochrome B561 family protein contains... 27 5.1
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 27 6.7
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor... 26 8.9
At3g23750.1 68416.m02986 leucine-rich repeat family protein / pr... 26 8.9
At1g29630.1 68414.m03622 exonuclease, putative similar to Swiss-... 26 8.9
At1g03170.1 68414.m00294 expressed protein 26 8.9
>At1g76360.1 68414.m08872 protein kinase, putative similar to
protein kinase APK1B, SWISS-PROT:P46573; contains
protein kinase domain, Pfam:PF00069
Length = 484
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 203 PAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 66
PA P KP T ++NPP ++ T R+V+NP K Q
Sbjct: 61 PAATPPREKPQHRTTRSVENPPREKPQEKT----RSVENPPREKPQ 102
>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (Glutamate--
ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
Length = 356
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 192 NNGGEHCSFSPVVLREFNGRKIISK 266
N G HC++S +RE G +II K
Sbjct: 244 NGAGAHCNYSTKSMREEGGYEIIKK 268
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 81 HGIFHCPNSQHRRRSRSLHG 140
H FHC S HRRRS G
Sbjct: 65 HRSFHCHRSNHRRRSNHAAG 84
>At5g50350.1 68418.m06236 expressed protein
Length = 584
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 102 NSQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGEHCSFS 221
+++ RR RSL + NRG S+++ + NN S S
Sbjct: 143 DTESSRRRRSLSRQPASNNRGGSSKVDSVSNNSSRRRSVS 182
>At5g38630.1 68418.m04672 cytochrome B561 family protein contains
Pfam domain, PF03188: Cytochrome b561
Length = 230
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 97 ALIVNIVGGAVLCMGGFLI-PIVAPLLG 177
A++VN +G +L +GGF+I +V P+ G
Sbjct: 196 AMLVNTMGVLILILGGFVILGVVTPVSG 223
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 102 NSQHRRRS--RSLHGRVFDPNRGTSARLQRIGNNGGEHCSFSPV 227
NS HR S +S H V G SAR +G N G + SP+
Sbjct: 226 NSAHRGSSVRKSFHSSV--GRSGGSARKSSVGKNQGTNVHLSPI 267
>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
chloroplast (NDPK2) identical to SP|O64903 Nucleoside
diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
thaliana]; contains Pfam PF00334 : Nucleoside
diphosphate kinase domain; contains Pfam profile
PF00334: Nucleoside diphosphate kinase
Length = 231
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 64 YCDLRIMGFFTALIVNIVGGAVLCMGGFLIPIVA 165
Y DL FF LI I G V+CM + +VA
Sbjct: 131 YKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVA 164
>At3g23750.1 68416.m02986 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 928
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 194 IPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKN 87
IPD K + +++ + PPT+LT+ ++KN
Sbjct: 246 IPDLSKSENLFDLQLRDNDLTGIVPPTLLTLASLKN 281
>At1g29630.1 68414.m03622 exonuclease, putative similar to
Swiss-Prot:P53695 exonuclease I (EXO I)
[Schizosaccharomyces pombe]
Length = 317
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 135 HGRVFDPNRGTSARLQRIGNNGGEHCSF-SPVVLRE 239
H RV+DPN L I +N GE F P LR+
Sbjct: 280 HQRVYDPNAEDIIHLCDISDNLGEDSDFVGPYPLRQ 315
>At1g03170.1 68414.m00294 expressed protein
Length = 240
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -2
Query: 218 EAAMLPAIIPDALKPSRGATIGIKNPPMQR--TAPPTMLTIRAVK-NPMI 78
EA P P LKP + K PPM R + PP + + K N M+
Sbjct: 86 EATTTPRAPPRQLKPQEDTNLPDKTPPMSRNNSFPPPIKFVEDSKYNRMV 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,505,520
Number of Sequences: 28952
Number of extensions: 197647
Number of successful extensions: 444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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