Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00215X
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   163   9e-42
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   163   9e-42
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   160   7e-41
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    28   0.49 
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    26   2.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   2.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   3.4  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   3.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   6.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.0  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    24   7.9  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  163 bits (396), Expect = 9e-42
 Identities = 73/113 (64%), Positives = 90/113 (79%)
 Frame = +3

Query: 69  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMSFLRKRCNV 248
           K +VID +GHLLGRLA+V+AK LL G KVVVV CE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 249 NPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNRRR 407
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  EG PPP D ++R
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKR 118


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  163 bits (396), Expect = 9e-42
 Identities = 73/113 (64%), Positives = 90/113 (79%)
 Frame = +3

Query: 69  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMSFLRKRCNV 248
           K +VID +GHLLGRLA+V+AK LL G KVVVV CE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 249 NPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNRRR 407
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  EG PPP D ++R
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKR 118


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  160 bits (389), Expect = 7e-41
 Identities = 70/113 (61%), Positives = 89/113 (78%)
 Frame = +3

Query: 69  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMSFLRKRCNV 248
           K ++ID +GHL+GRLA+ +AK LL G KVVVV CE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 249 NPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNRRR 407
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  EG PPP D ++R
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKR 118


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 130 RSFSKGTKLLWFPANKSTSLATSLGTNS 213
           R+ ++ + + W P N++ +L TSL  NS
Sbjct: 336 RTTARASSVAWIPGNRTPTLVTSLQNNS 363


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +3

Query: 144 GNKVVVVPCEQINISGNFFRNKLKLMSFLRKRCNVNP-TRGPFHFRAPSK-ILWKTVRGM 317
           G+ VVV  C +I ISG    N  K  S   +  ++   T      +   K +L + V GM
Sbjct: 52  GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGM 110

Query: 318 IPHKTERGKNALRRLRTYEGGPPP 389
           +P + +     ++RL  Y+G   P
Sbjct: 111 LP-RNKLWDRRMKRLYIYDGAEHP 133


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 361 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 275
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 156 VVVPCEQINISGNF 197
           VV PC+ I+I+GNF
Sbjct: 372 VVTPCDTISIAGNF 385


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 262 PRVGFTLHLLRRNDISLSLFLKKLP 188
           P +G   H+LR +   LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 382 GPPSYVRSLLRAFLPRSVLCGIIP 311
           G  SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 204  NKLKLMSFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMI 320
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 297 WKTVRGMIPHKTERGKNALRRLRTYE 374
           W  +R ++ H T  G+ A R  R YE
Sbjct: 349 WAPLRVVVLHATGSGQRASREKRQYE 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,764
Number of Sequences: 5004
Number of extensions: 31713
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)