Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00215X
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 156 6e-39
07_01_0071 - 522920-523063,524125-524212,524289-524677 151 2e-37
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 82 1e-16
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 40 0.001
11_04_0056 + 12942802-12942920,12943022-12943115 34 0.038
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 31 0.47
03_04_0191 - 18293842-18294273 29 1.4
07_01_1106 - 10187609-10190041,10190292-10191932 28 2.5
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 28 2.5
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894... 28 3.3
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 3.3
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 156 bits (379), Expect = 6e-39
Identities = 70/122 (57%), Positives = 90/122 (73%)
Frame = +3
Query: 42 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLM 221
+V +G +V+D R H+LGRLA++IAK LL G +VVVV CE+I +SG R K+K +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 222 SFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNR 401
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ YEG PPP D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
Query: 402 RR 407
+R
Sbjct: 121 KR 122
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 151 bits (367), Expect = 2e-37
Identities = 66/122 (54%), Positives = 88/122 (72%)
Frame = +3
Query: 42 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLM 221
+V +G + +V+D R H+LGRLA+++AK LL G +VVVV CE++ ISG R K+K +
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYL 60
Query: 222 SFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNR 401
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ ++G PPP D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRT 120
Query: 402 RR 407
+R
Sbjct: 121 KR 122
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 82.2 bits (194), Expect = 1e-16
Identities = 34/55 (61%), Positives = 42/55 (76%)
Frame = +3
Query: 243 NVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPPLDNRRR 407
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ YE PP D +R
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKR 56
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 39.5 bits (88), Expect = 0.001
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Frame = +3
Query: 78 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVPCEQINISGNFFRNKLKLM 221
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 222 SFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPP 389
R T R P +I+ VRGM+P K G+ L+ Y+G P
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHP 655
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 34.3 bits (75), Expect = 0.038
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 336 RGKNALRRLRTYEGGPPPLDNRRR 407
RG+ AL RL+ YEG PPP D +R
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKR 32
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 243 NVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGPPP 389
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>03_04_0191 - 18293842-18294273
Length = 143
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 388 GGGPPSYVRSLLRAFLPRS 332
GGGP VRSLL + LPRS
Sbjct: 115 GGGPSGEVRSLLPSLLPRS 133
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 262 PRVGFTLHLLRRNDISLSLFLKKLPEMLIC 173
P +G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +1
Query: 118 Q*SPRSFSKGTKLLWFPANKSTSLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 297
Q SP + +L WF N + S LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 298 GRL*EV 315
GRL E+
Sbjct: 624 GRLSEM 629
>06_03_1218 -
28488661-28488757,28488924-28488988,28489352-28489448,
28489647-28489852,28489853-28490152
Length = 254
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 60 FSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMS--FLR 233
FS+ A++ HL G L + L N + +P + +NIS NFF + + S ++
Sbjct: 68 FSSIAVLDVSFNHLDGPL-----QELQSSNPSLSLPLQVMNISSNFFHRTISISSTEMMK 122
Query: 234 KRCNVNPTRGPFHFRAPSKILWKT 305
+N + F + P+ I T
Sbjct: 123 NLVALNASNNSFTGQIPASICIST 146
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 114 AAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMS 224
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,348,404
Number of Sequences: 37544
Number of extensions: 231862
Number of successful extensions: 583
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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