Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00215X
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 29   1.5  
SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)                      29   1.9  
SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)              27   4.5  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 27   5.9  
SB_20693| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             27   5.9  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +3

Query: 315 MIPHKTERGKNALRRLRTYEGGPPPLD 395
           MIPHKT++G  A+ R++ ++G PPP D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
 Frame = +3

Query: 78  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVPCEQINISGNFFRNKLKLM 221
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL   
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79

Query: 222 SFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYE 374
                           H +  ++ILW+ V GM+P K       ++RL  +E
Sbjct: 80  HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFE 129


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 298 HRILDGALKWKGPRVGFTLHLLRRNDISLSLFLKKLPEMLICSQGTTT 155
           H +   AL+W+G RV FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
          Length = 386

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 259 RVGFTLHLLRRNDISLSLFLKKL 191
           R+G  LHL  R DI L LFL +L
Sbjct: 231 RIGIELHLFVRRDIELHLFLLQL 253


>SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)
          Length = 144

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +3

Query: 192 NFFRNKLKLMSFLRKRCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTY 371
           ++FR K   M  L + C+ +P   P    A   +     R  +PH   +  N       +
Sbjct: 62  SWFRKKCHRMRHLHQLCSTSPANSPVFLIARKLLPRMRGRSRVPHILCQLANTSTPKMRH 121

Query: 372 EGGPPPLDNRRR 407
           +  P P +NR R
Sbjct: 122 QADPGP-NNRAR 132


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGN 149
           +G +NK ++IDG   L     A   +V+++GN
Sbjct: 609 SGTTNKRVIIDGNDMLSPHSVATNKRVIIDGN 640


>SB_20693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 228 LRKRCNVNPTRGPFHFRAPSKILW-KTVRGMIP 323
           L+   + N T+GP HFR    IL+ +TV G  P
Sbjct: 11  LKNDDDYNSTKGPKHFRVLLNILFLRTVTGAFP 43


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 189 GNFFRNKLKLMSFLRKRCNVNPTRGP 266
           GN F   L+L S  R+ C+ NP+  P
Sbjct: 318 GNVFSRPLRLFSRARRMCSWNPSDNP 343


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 312  GMIPHKTERGKNA 350
            GMIPH+T+R KNA
Sbjct: 4013 GMIPHQTDRTKNA 4025


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 264 PFHFRAPSKILWKTVRGMIPHKTERG---KNALRRLRTYEGGPPPLDNR 401
           PF+ RAP  IL +TV G       R    + + R++  + G P P D+R
Sbjct: 43  PFYDRAPYCILSRTVPGGERKNGRRAGGTRLSSRKIGYHRGKPSPFDDR 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,647,354
Number of Sequences: 59808
Number of extensions: 247189
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)