Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00215X
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   171   2e-43
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   171   2e-43
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    26   9.1  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    26   9.1  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    26   9.1  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    26   9.1  
AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  171 bits (415), Expect = 2e-43
 Identities = 75/109 (68%), Positives = 91/109 (83%)
 Frame = +3

Query: 57  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMSFLRK 236
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+  E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 237 RCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGP 383
           RCN+NP RG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR YEG P
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVP 110


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  171 bits (415), Expect = 2e-43
 Identities = 75/109 (68%), Positives = 91/109 (83%)
 Frame = +3

Query: 57  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVPCEQINISGNFFRNKLKLMSFLRK 236
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+  E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 237 RCNVNPTRGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYEGGP 383
           RCN+NP RG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR YEG P
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVP 110


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
           protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 51  MTGFSNKAIVIDGRGHLLGRLAAVI 125
           M  FS K+++I G  + +GR AAVI
Sbjct: 1   MARFSGKSVIITGSSNGIGRSAAVI 25


>U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical
           protein C39D10.3b protein.
          Length = 213

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 179 DLFAGNHNNFVPFEKDLGDY 120
           DLF   H +F+   KDLGDY
Sbjct: 69  DLFHAGHLSFLEAAKDLGDY 88


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 179 DLFAGNHNNFVPFEKDLGDY 120
           DLF   H +F+   KDLGDY
Sbjct: 186 DLFHAGHLSFLEAAKDLGDY 205


>Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical
           protein R08H2.1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  MTGFSNKAIVIDGRGHLLGRLAAVI 125
           M  FS K+I+I G    +GR AAVI
Sbjct: 1   MARFSGKSIIITGSSSGIGRSAAVI 25


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 174 QINISGNFFRNKLKLM-SFLRKRCNVNPTRGPFHF 275
           Q + S NFF+NK K++ +FL+K+      +  FHF
Sbjct: 93  QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282  PSKILWKTVRGMIPHKTERGKNALRRLRTYE 374
            PSK++W+   G IP +    +  LR+   +E
Sbjct: 1003 PSKVVWRFENGTIPEEAANFEKILRKSGGFE 1033


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282  PSKILWKTVRGMIPHKTERGKNALRRLRTYE 374
            PSK++W+   G IP +    +  LR+   +E
Sbjct: 990  PSKVVWRFENGTIPEEAANFEKILRKSGGFE 1020


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282  PSKILWKTVRGMIPHKTERGKNALRRLRTYE 374
            PSK++W+   G IP +    +  LR+   +E
Sbjct: 988  PSKVVWRFENGTIPEEAANFEKILRKSGGFE 1018


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 370 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRVGFTLHLLRRNDISLSLFLKK 194
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 193 LPEMLI 176
           LPE  +
Sbjct: 210 LPEWTV 215


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 400 RLSKGGGPPSYVRSLLRAFLPRSVL--CGIIPLTVFHRILDGALKWKGPRV 254
           ++S G   P++V +   +F+  S +    ++PL    ++L  +LKW   R+
Sbjct: 321 KVSSGETDPTWVGAWWLSFIAASFVGFVAVLPLASLPKVLPASLKWHRSRL 371


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 370 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRVGFTLHLLRRNDISLSLFLKK 194
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 193 LPEMLI 176
           LPE  +
Sbjct: 210 LPEWTV 215


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 370 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRVGFTLHLLRRNDISLSLFLKK 194
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 193 LPEMLI 176
           LPE  +
Sbjct: 210 LPEWTV 215


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 282  PSKILWKTVRGMIPHKTERGKNALRRLRTYE 374
            PSK++W+   G IP +    +  LR+   +E
Sbjct: 1003 PSKVVWRFENGTIPEEAANFEKILRKSGGFE 1033


>AC006677-5|AAF39950.1|  280|Caenorhabditis elegans Hypothetical
           protein R05D8.7 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  MTGFSNKAIVIDGRGHLLGRLAAVI 125
           M  FSNK ++I G  + +GR  A++
Sbjct: 1   MPRFSNKTVIITGSSNGIGRTTAIL 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,122,156
Number of Sequences: 27780
Number of extensions: 182269
Number of successful extensions: 477
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)